Mercurial > repos > iuc > package_tophat_2_1_0

annotate tool_dependencies.xml @ 0:ed92d4c8e7f6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
author iuc
date Mon, 09 May 2016 10:33:10 -0400
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ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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1 <?xml version="1.0"?>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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2 <tool_dependency>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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3 <package name="tophat" version="2.1.0">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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4 <install version="1.0">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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5 <actions_group>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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6 <actions architecture="x86_64" os="linux">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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7 <action type="download_by_url" sha256sum="8579764a5d4cf2c6c94f8567cd94218882bf993a9a9eab1f9744e53c801d4a2f">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.Linux_x86_64.tar.gz</action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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8 <action type="move_directory_files">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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9 <source_directory>.</source_directory>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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10 <destination_directory>$INSTALL_DIR</destination_directory>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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11 </action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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12 <action type="set_environment">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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13 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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14 </action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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15 </actions>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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16 <actions architecture="x86_64" os="darwin">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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17 <action type="download_by_url" sha256sum="cc1202824b3f15c41e145fe0d64f36ef7a2ab169530c5a26cafe8a3819f57b10">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.OSX_x86_64.tar.gz</action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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18 <action type="move_directory_files">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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19 <source_directory>.</source_directory>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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20 <destination_directory>$INSTALL_DIR</destination_directory>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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21 </action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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22 <action type="set_environment">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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24 </action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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25 </actions>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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26 <actions>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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27 <action type="download_by_url" sha256sum="e7fa2b170408e785e4fafd0bccf4ecfab5151c480a2438dffa42183cfda71f99">https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.tar.gz</action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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28 <action type="autoconf"/>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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29 </actions>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
iuc
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30 <action type="set_environment">
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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32 </action>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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33 </actions_group>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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34 </install>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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35 <readme />
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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36 </package>
ed92d4c8e7f6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_1_0 commit 2b0ef4b571073138d97d285e13058c9f04f32fa7
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37 </tool_dependency>