Mercurial > repos > iuc > package_trinity_2_1_1

changeset 8:1585b0b46b84 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_trinity_2_1_1 commit 104fdfbf4955137a08446284b0fcf3e6e5b9b24b
author iuc
date Mon, 11 Jul 2016 04:30:25 -0400
parents cec8b7f159c5
children
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 16 12:17:28 2016 -0400
+++ b/tool_dependencies.xml	Mon Jul 11 04:30:25 2016 -0400
@@ -118,6 +118,7 @@
                 </action>
 
                 <action type="shell_command">sed -i.bak -e 's/-ltinfo//' trinity-plugins/Makefile</action> <!-- tinfo is included in ncurses lib-->
+                <action type="shell_command">sed -i.bak 's/\(trinity_essentials:.*\) samtools/\1/' trinity-plugins/Makefile</action> <!-- samtools does not compile with package_zlib_1_2_8, but does not need to be built -->
                 <action type="shell_command">sed -i.bak -e '/tar xvf samtools-0.1.19.tar.bz2/a \\tsed -i.bak -e "s|-lcurses|-lncurses|" samtools-0.1.19/Makefile samtools-0.1.19/Makefile' trinity-plugins/Makefile</action> <!-- ncurses instead of curses -->
 
                 <action type="shell_command">make</action>