Mercurial > repos > iuc > package_trnascan_1_3_1

changeset 1:a3fb2752c340 draft

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Uploaded
author bgruening
date Tue, 25 Feb 2014 12:34:44 -0500
parents 2ddcff5d0fa2
children a3c3535a61a5
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Sep 08 07:13:55 2013 -0400
+++ b/tool_dependencies.xml	Tue Feb 25 12:34:44 2014 -0500
@@ -7,9 +7,9 @@
                 <action type="make_directory">$INSTALL_DIR/lib/tRNAscan-SE/</action>
                 <action type="make_directory">$INSTALL_DIR/man/</action>
                 <!-- replacing the hardcoded pathvariables with the real ones -->
-                <action type="shell_command">cd ./tRNAscan-SE-1.3.1 &amp;&amp; sed 's%^BINDIR  = .*%BINDIR = $INSTALL_DIR/bin/%' Makefile | sed 's%^LIBDIR  = .*%LIBDIR = $INSTALL_DIR/lib/tRNAscan-SE/%' | sed 's%^MANDIR  = .*%MANDIR = $INSTALL_DIR/man%' > Makefile_new</action>
-                <action type="shell_command">cd ./tRNAscan-SE-1.3.1 &amp;&amp; rm Makefile &amp;&amp; mv Makefile_new Makefile</action>
-                <action type="shell_command">cd ./tRNAscan-SE-1.3.1 &amp;&amp; make &amp;&amp; make install</action>
+                <action type="shell_command">sed 's%^BINDIR  = .*%BINDIR = $INSTALL_DIR/bin/%' Makefile | sed 's%^LIBDIR  = .*%LIBDIR = $INSTALL_DIR/lib/tRNAscan-SE/%' | sed 's%^MANDIR  = .*%MANDIR = $INSTALL_DIR/man%' > Makefile_new</action>
+                <action type="shell_command">rm Makefile &amp;&amp; mv Makefile_new Makefile</action>
+                <action type="make_install"/>
 
                 <!-- for some reason infernal needs to be directly under the bin/ from tRNAScan -->
                 <action type="shell_command">wget ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz</action>