Mercurial > repos > iuc > package_ucsc_tools_0_1

comparison tool_dependencies.xml @ 0:4e9561e890fe draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ucsc_tools_0_1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:03:35 -0400
parents
children 359b0988e735
comparison
equal deleted inserted replaced
-1:000000000000 0:4e9561e890fe
1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <!-- This package will not track any version of the underlying toools.
4 Any hint how to compile or ship the binaries without violating the license is very much appreciated.
5 -->
6 <package name="ucsc_tools" version="0.1">
7 <install version="1.0">
8 <actions>
9 <action type="download_binary">
10 <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</url_template>
11 <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bedGraphToBigWig</url_template>
12 <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bedGraphToBigWig</url_template>
13 <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</url_template>
14 </action>
15 <action type="chmod">
16 <file mode="755">$INSTALL_DIR/bedGraphToBigWig</file>
17 </action>
18 <action type="download_binary">
19 <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigInfo</url_template>
20 <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigInfo</url_template>
21 <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigInfo</url_template>
22 <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigInfo</url_template>
23 </action>
24 <action type="chmod">
25 <file mode="755">$INSTALL_DIR/bigWigInfo</file>
26 </action>
27 <action type="download_binary">
28 <url_template os="linux" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph</url_template>
29 <url_template os="darwin" architecture="i686">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigToBedGraph</url_template>
30 <url_template os="darwin" architecture="i386">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.i386/bigWigToBedGraph</url_template>
31 <url_template os="darwin" architecture="x86_64">http://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToBedGraph</url_template>
32 </action>
33 <action type="chmod">
34 <file mode="755">$INSTALL_DIR/bigWigToBedGraph</file>
35 </action>
36 <action type="set_environment">
37 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
38 <environment_variable name="UCSC_TOOLS_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
39 </action>
40 </actions>
41 </install>
42 <readme>The tools downloaded by this dependency definition are free for academic use. TODO: UCSC tools are only available with their latest version. That is not good for reproducibility.</readme>
43 </package>
44 </tool_dependency>