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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="perl" version="5.18.1">
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4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="vienna_rna" version="1.8.5">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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12 <package name="perl" version="5.18.1" />
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13 </repository>
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14 </action>
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15 <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
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16 <action type="change_directory">Perl</action>
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17 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
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18 <action type="change_directory">..</action>
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19 <action type="make_install" />
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20 <action type="set_environment">
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21 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
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22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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24 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
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25 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
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26 <environment_variable action="set_to" name="ROOT_VIENNA_RNA_DIR">$INSTALL_DIR</environment_variable>
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27 </action>
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28 </actions>
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29 </install>
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30 <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme>
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31 </package>
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32 </tool_dependency>
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