Mercurial > repos > iuc > package_vienna_rna_1_8

comparison tool_dependencies.xml @ 1:6757330f89cd draft default tip

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author iuc
date Tue, 03 Feb 2015 08:14:37 -0500
parents 54e961ee33d4
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0:54e961ee33d4 1:6757330f89cd
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="perl" version="5.18.1"> 3 <package name="perl" version="5.18.1">
4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="vienna_rna" version="1.8.5"> 6 <package name="vienna_rna" version="1.8.5">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action> 9 <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
10 <action type="set_environment_for_install"> 10 <action type="set_environment_for_install">
11 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 11 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="perl" version="5.18.1" /> 12 <package name="perl" version="5.18.1" />
13 </repository> 13 </repository>
14 </action> 14 </action>
15 <action type="shell_command">./configure --prefix $INSTALL_DIR</action> 15 <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
16 <action type="change_directory">Perl</action> 16 <action type="change_directory">Perl</action>
17 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action> 17 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
18 <action type="change_directory">..</action> 18 <action type="change_directory">..</action>
19 <action type="make_install" /> 19 <action type="make_install" />
20
20 <action type="set_environment"> 21 <action type="set_environment">
21 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> 22 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable> 23 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
24 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable> 25 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
25 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable> 26 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
26 <environment_variable action="set_to" name="ROOT_VIENNA_RNA_DIR">$INSTALL_DIR</environment_variable> 27 <environment_variable action="set_to" name="ROOT_VIENNA_RNA_DIR">$INSTALL_DIR</environment_variable>