Mercurial > repos > iuc > package_vienna_rna_1_8

diff tool_dependencies.xml @ 0:54e961ee33d4 draft

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Imported from capsule None
author iuc
date Tue, 27 Jan 2015 09:02:04 -0500
parents
children 6757330f89cd
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jan 27 09:02:04 2015 -0500
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="perl" version="5.18.1">
+      <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="vienna_rna" version="1.8.5">
+      <install version="1.0">
+          <actions>
+              <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-1.8.5.tar.gz</action>
+                <action type="set_environment_for_install">
+                  <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                      <package name="perl" version="5.18.1" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR</action>
+                <action type="change_directory">Perl</action>
+                <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR/perl</action>
+                <action type="change_directory">..</action>
+                <action type="make_install" />
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/include</environment_variable>
+                    <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/perl/lib</environment_variable>
+                    <environment_variable action="set_to" name="ROOT_VIENNA_RNA_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Compiling ViennaRNA requires a C compiler (typically gcc)</readme>
+    </package>
+</tool_dependency>