Mercurial > repos > iuc > package_vsearch_1_1_3

annotate tool_dependencies.xml @ 0:c1fc77fac9fb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:03:47 -0400
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children 559454eab468
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c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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1 <?xml version="1.0"?>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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2 <tool_dependency>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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3 <package name="vsearch" version="1.1.3">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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4 <install version="1.0">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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5 <actions_group>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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6 <actions architecture="x86_64" os="darwin">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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7 <action type="download_file">https://github.com/torognes/vsearch/releases/download/v1.1.3/vsearch-1.1.3-osx-x86_64</action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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8 <action type="move_file">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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9 <source>vsearch-1.1.3-osx-x86_64</source>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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10 <destination>$INSTALL_DIR/bin/vsearch</destination>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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11 </action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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12 <action type="shell_command">chmod +x $INSTALL_DIR/bin/vsearch</action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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13 </actions>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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14 <actions architecture="x86_64" os="linux">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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15 <action type="download_file">https://github.com/torognes/vsearch/releases/download/v1.1.3/vsearch-1.1.3-linux-x86_64</action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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16 <action type="move_file">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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17 <source>vsearch-1.1.3-linux-x86_64</source>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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18 <destination>$INSTALL_DIR/bin/vsearch</destination>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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19 </action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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20 <action type="shell_command">chmod +x $INSTALL_DIR/bin/vsearch</action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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21 </actions>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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22
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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23 <action type="set_environment">
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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24 <environment_variable action="set_to" name="VSEARCH_ROOT_DIR">$INSTALL_DIR</environment_variable>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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26 </action>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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27 </actions_group>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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28 </install>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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29 <readme>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
iuc
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30 VSEARCH: Open and free 64-bit multithreaded tool for processing metagenomic sequences, including searching, clustering,
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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31 chimera detection, dereplication, sorting, masking and shuffling.
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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32 https://github.com/torognes/vsearch
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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33 </readme>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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34 </package>
c1fc77fac9fb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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35 </tool_dependency>