Mercurial > repos > iuc > package_vsearch_1_1_3

comparison tool_dependencies.xml @ 0:c1fc77fac9fb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:03:47 -0400
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children 559454eab468
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-1:000000000000 0:c1fc77fac9fb
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="vsearch" version="1.1.3">
4 <install version="1.0">
5 <actions_group>
6 <actions architecture="x86_64" os="darwin">
7 <action type="download_file">https://github.com/torognes/vsearch/releases/download/v1.1.3/vsearch-1.1.3-osx-x86_64</action>
8 <action type="move_file">
9 <source>vsearch-1.1.3-osx-x86_64</source>
10 <destination>$INSTALL_DIR/bin/vsearch</destination>
11 </action>
12 <action type="shell_command">chmod +x $INSTALL_DIR/bin/vsearch</action>
13 </actions>
14 <actions architecture="x86_64" os="linux">
15 <action type="download_file">https://github.com/torognes/vsearch/releases/download/v1.1.3/vsearch-1.1.3-linux-x86_64</action>
16 <action type="move_file">
17 <source>vsearch-1.1.3-linux-x86_64</source>
18 <destination>$INSTALL_DIR/bin/vsearch</destination>
19 </action>
20 <action type="shell_command">chmod +x $INSTALL_DIR/bin/vsearch</action>
21 </actions>
22
23 <action type="set_environment">
24 <environment_variable action="set_to" name="VSEARCH_ROOT_DIR">$INSTALL_DIR</environment_variable>
25 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
26 </action>
27 </actions_group>
28 </install>
29 <readme>
30 VSEARCH: Open and free 64-bit multithreaded tool for processing metagenomic sequences, including searching, clustering,
31 chimera detection, dereplication, sorting, masking and shuffling.
32 https://github.com/torognes/vsearch
33 </readme>
34 </package>
35 </tool_dependency>