Mercurial > repos > iuc > package_vsearch_1_1_3

diff tool_dependencies.xml @ 0:c1fc77fac9fb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_vsearch_1_1_3 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
author iuc
date Tue, 19 May 2015 15:03:47 -0400
parents
children 559454eab468
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 19 15:03:47 2015 -0400
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vsearch" version="1.1.3">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_file">https://github.com/torognes/vsearch/releases/download/v1.1.3/vsearch-1.1.3-osx-x86_64</action>
+                    <action type="move_file">
+                        <source>vsearch-1.1.3-osx-x86_64</source>
+                        <destination>$INSTALL_DIR/bin/vsearch</destination>
+                    </action>
+                    <action type="shell_command">chmod +x $INSTALL_DIR/bin/vsearch</action>
+                </actions>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_file">https://github.com/torognes/vsearch/releases/download/v1.1.3/vsearch-1.1.3-linux-x86_64</action>
+                    <action type="move_file">
+                        <source>vsearch-1.1.3-linux-x86_64</source>
+                        <destination>$INSTALL_DIR/bin/vsearch</destination>
+                    </action>
+                    <action type="shell_command">chmod +x $INSTALL_DIR/bin/vsearch</action>
+                </actions>
+
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="VSEARCH_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+        VSEARCH: Open and free 64-bit multithreaded tool for processing metagenomic sequences, including searching, clustering, 
+        chimera detection, dereplication, sorting, masking and shuffling.
+        https://github.com/torognes/vsearch
+        </readme>
+    </package>
+</tool_dependency>