Mercurial > repos > iuc > pairtools_parse

annotate test-data/pairs_output_with_chromsize.stats @ 6:26ed6ceeeec1 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 203375a1ff145613df37dae4aba6493708f6ad54
author iuc
date Tue, 09 Apr 2024 10:12:50 +0000
parents a98caf2d8309
children 44cb74c154bc
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a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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1 total 592
a98caf2d8309 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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2 total_unmapped 4
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3 total_single_sided_mapped 147
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4 total_mapped 441
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5 total_dups 0
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6 total_nodups 441
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7 cis 441
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8 trans 0
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9 pair_types/UU 405
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10 pair_types/NR 119
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11 pair_types/MU 21
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12 pair_types/UR 19
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13 pair_types/RU 17
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14 pair_types/MR 6
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15 pair_types/MM 4
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16 pair_types/NU 1
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17 cis_1kb+ 75
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18 cis_2kb+ 72
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19 cis_4kb+ 70
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20 cis_10kb+ 67
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21 cis_20kb+ 61
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22 cis_40kb+ 61
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23 summary/frac_cis 1.0
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24 summary/frac_cis_1kb+ 0.17006802721088435
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25 summary/frac_cis_2kb+ 0.16326530612244897
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26 summary/frac_cis_4kb+ 0.15873015873015872
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27 summary/frac_cis_10kb+ 0.15192743764172337
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28 summary/frac_cis_20kb+ 0.1383219954648526
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29 summary/frac_cis_40kb+ 0.1383219954648526
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30 summary/frac_dups 0.0
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31 summary/complexity_naive nan
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32 chrom_freq/Test_seq/Test_seq 441
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33 dist_freq/0-1/+- 0
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34 dist_freq/0-1/-+ 0
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35 dist_freq/0-1/-- 0
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37 dist_freq/1-2/+- 0
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39 dist_freq/1-2/-- 0
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41 dist_freq/2-3/+- 0
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45 dist_freq/3-6/+- 0
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49 dist_freq/6-10/+- 0
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51 dist_freq/6-10/-- 0
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53 dist_freq/10-18/+- 0
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57 dist_freq/18-32/+- 0
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58 dist_freq/18-32/-+ 0
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61 dist_freq/32-56/+- 7
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62 dist_freq/32-56/-+ 0
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65 dist_freq/56-100/+- 9
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81 dist_freq/562-1000/+- 1
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97 dist_freq/5623-10000/+- 2
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102 dist_freq/10000-17783/-+ 2
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103 dist_freq/10000-17783/-- 0
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104 dist_freq/10000-17783/++ 1
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105 dist_freq/17783-31623/+- 1
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106 dist_freq/17783-31623/-+ 0
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107 dist_freq/17783-31623/-- 0
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108 dist_freq/17783-31623/++ 0
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109 dist_freq/31623-56234/+- 0
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110 dist_freq/31623-56234/-+ 1
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111 dist_freq/31623-56234/-- 21
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112 dist_freq/31623-56234/++ 10
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113 dist_freq/56234-100000/+- 3
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114 dist_freq/56234-100000/-+ 0
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115 dist_freq/56234-100000/-- 1
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116 dist_freq/56234-100000/++ 3
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117 dist_freq/100000-177828/+- 3
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118 dist_freq/100000-177828/-+ 3
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119 dist_freq/100000-177828/-- 2
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120 dist_freq/100000-177828/++ 7
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121 dist_freq/177828-316228/+- 4
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122 dist_freq/177828-316228/-+ 0
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123 dist_freq/177828-316228/-- 0
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124 dist_freq/177828-316228/++ 2
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125 dist_freq/316228-562341/+- 0
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126 dist_freq/316228-562341/-+ 1
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127 dist_freq/316228-562341/-- 0
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128 dist_freq/316228-562341/++ 0
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129 dist_freq/562341-1000000/+- 0
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130 dist_freq/562341-1000000/-+ 0
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131 dist_freq/562341-1000000/-- 0
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132 dist_freq/562341-1000000/++ 0
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133 dist_freq/1000000-1778279/+- 0
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134 dist_freq/1000000-1778279/-+ 0
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135 dist_freq/1000000-1778279/-- 0
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136 dist_freq/1000000-1778279/++ 0
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137 dist_freq/1778279-3162278/+- 0
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138 dist_freq/1778279-3162278/-+ 0
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139 dist_freq/1778279-3162278/-- 0
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140 dist_freq/1778279-3162278/++ 0
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141 dist_freq/3162278-5623413/+- 0
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142 dist_freq/3162278-5623413/-+ 0
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143 dist_freq/3162278-5623413/-- 0
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144 dist_freq/3162278-5623413/++ 0
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145 dist_freq/5623413-10000000/+- 0
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146 dist_freq/5623413-10000000/-+ 0
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147 dist_freq/5623413-10000000/-- 0
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148 dist_freq/5623413-10000000/++ 0
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149 dist_freq/10000000-17782794/+- 0
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150 dist_freq/10000000-17782794/-+ 0
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151 dist_freq/10000000-17782794/-- 0
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152 dist_freq/10000000-17782794/++ 0
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153 dist_freq/17782794-31622777/+- 0
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154 dist_freq/17782794-31622777/-+ 0
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155 dist_freq/17782794-31622777/-- 0
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156 dist_freq/17782794-31622777/++ 0
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157 dist_freq/31622777-56234133/+- 0
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158 dist_freq/31622777-56234133/-+ 0
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159 dist_freq/31622777-56234133/-- 0
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160 dist_freq/31622777-56234133/++ 0
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161 dist_freq/56234133-100000000/+- 0
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162 dist_freq/56234133-100000000/-+ 0
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163 dist_freq/56234133-100000000/-- 0
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164 dist_freq/56234133-100000000/++ 0
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165 dist_freq/100000000-177827941/+- 0
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166 dist_freq/100000000-177827941/-+ 0
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167 dist_freq/100000000-177827941/-- 0
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168 dist_freq/100000000-177827941/++ 0
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169 dist_freq/177827941-316227766/+- 0
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170 dist_freq/177827941-316227766/-+ 0
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171 dist_freq/177827941-316227766/-- 0
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172 dist_freq/177827941-316227766/++ 0
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173 dist_freq/316227766-562341325/+- 0
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174 dist_freq/316227766-562341325/-+ 0
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175 dist_freq/316227766-562341325/-- 0
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176 dist_freq/316227766-562341325/++ 0
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177 dist_freq/562341325-1000000000/+- 0
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178 dist_freq/562341325-1000000000/-+ 0
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179 dist_freq/562341325-1000000000/-- 0
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180 dist_freq/562341325-1000000000/++ 0
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181 dist_freq/562341325+/+- 0
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182 dist_freq/562341325+/-+ 0
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183 dist_freq/562341325+/-- 0
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184 dist_freq/562341325+/++ 0
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185 chromsizes/Test_seq 450060