Mercurial > repos > iuc > pairtools_parse

comparison test-data/output_parsed_pairs.stats @ 8:44cb74c154bc draft

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planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author iuc
date Tue, 30 Apr 2024 12:03:00 +0000
parents 68413c5eb035
children
comparison
equal deleted inserted replaced
7:b0a1f128fa15 8:44cb74c154bc
4 total_mapped 308 4 total_mapped 308
5 total_dups 0 5 total_dups 0
6 total_nodups 308 6 total_nodups 308
7 cis 308 7 cis 308
8 trans 0 8 trans 0
9 pair_types/MU 88 9 pair_types/MU 95
10 pair_types/UU 293 10 pair_types/UU 293
11 pair_types/MM 49 11 pair_types/MM 49
12 pair_types/UR 8 12 pair_types/UR 8
13 pair_types/MR 26 13 pair_types/MR 26
14 pair_types/NR 110 14 pair_types/NR 110
15 pair_types/RU 7 15 pair_types/RU 7
16 pair_types/nM 3 16 pair_types/NM 4
17 pair_types/Mu 7
18 pair_types/NM 1
19 cis_1kb+ 15 17 cis_1kb+ 15
20 cis_2kb+ 14 18 cis_2kb+ 14
21 cis_4kb+ 14 19 cis_4kb+ 14
22 cis_10kb+ 12 20 cis_10kb+ 12
23 cis_20kb+ 9 21 cis_20kb+ 9
29 summary/frac_cis_10kb+ 0.03896103896103896 27 summary/frac_cis_10kb+ 0.03896103896103896
30 summary/frac_cis_20kb+ 0.02922077922077922 28 summary/frac_cis_20kb+ 0.02922077922077922
31 summary/frac_cis_40kb+ 0.02922077922077922 29 summary/frac_cis_40kb+ 0.02922077922077922
32 summary/frac_dups 0.0 30 summary/frac_dups 0.0
33 summary/complexity_naive nan 31 summary/complexity_naive nan
32 summary/dist_freq_convergence/convergence_dist 177828
33 summary/dist_freq_convergence/strands_w_max_convergence_dist ++
34 summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05
35 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 4
36 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 2
37 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 1
38 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 301
39 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 308
40 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0
41 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.012987012987012988
42 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.006493506493506494
43 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.003246753246753247
44 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.9772727272727273
45 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0
46 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0
47 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.012987012987012988
48 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.006493506493506494
49 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.003246753246753247
50 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.9772727272727273
51 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0
52 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0
53 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.012987012987012988
54 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.006493506493506494
55 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.003246753246753247
56 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.9772727272727273
57 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0
58 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0
34 chrom_freq/Test_seq/Test_seq 308 59 chrom_freq/Test_seq/Test_seq 308
35 dist_freq/0-1/+- 0 60 dist_freq/0-1/+- 0
36 dist_freq/0-1/-+ 0 61 dist_freq/0-1/-+ 0
37 dist_freq/0-1/-- 0 62 dist_freq/0-1/-- 0
38 dist_freq/0-1/++ 0 63 dist_freq/0-1/++ 0
42 dist_freq/1-2/++ 0 67 dist_freq/1-2/++ 0
43 dist_freq/2-3/+- 0 68 dist_freq/2-3/+- 0
44 dist_freq/2-3/-+ 0 69 dist_freq/2-3/-+ 0
45 dist_freq/2-3/-- 0 70 dist_freq/2-3/-- 0
46 dist_freq/2-3/++ 0 71 dist_freq/2-3/++ 0
47 dist_freq/3-6/+- 0 72 dist_freq/3-4/+- 0
48 dist_freq/3-6/-+ 0 73 dist_freq/3-4/-+ 0
49 dist_freq/3-6/-- 0 74 dist_freq/3-4/-- 0
50 dist_freq/3-6/++ 0 75 dist_freq/3-4/++ 0
51 dist_freq/6-10/+- 0 76 dist_freq/4-6/+- 0
52 dist_freq/6-10/-+ 0 77 dist_freq/4-6/-+ 0
53 dist_freq/6-10/-- 0 78 dist_freq/4-6/-- 0
54 dist_freq/6-10/++ 0 79 dist_freq/4-6/++ 0
55 dist_freq/10-18/+- 0 80 dist_freq/6-7/+- 0
56 dist_freq/10-18/-+ 0 81 dist_freq/6-7/-+ 0
57 dist_freq/10-18/-- 0 82 dist_freq/6-7/-- 0
58 dist_freq/10-18/++ 0 83 dist_freq/6-7/++ 0
59 dist_freq/18-32/+- 0 84 dist_freq/7-10/+- 0
60 dist_freq/18-32/-+ 0 85 dist_freq/7-10/-+ 0
61 dist_freq/18-32/-- 0 86 dist_freq/7-10/-- 0
62 dist_freq/18-32/++ 0 87 dist_freq/7-10/++ 0
63 dist_freq/32-56/+- 0 88 dist_freq/10-13/+- 0
64 dist_freq/32-56/-+ 0 89 dist_freq/10-13/-+ 0
65 dist_freq/32-56/-- 0 90 dist_freq/10-13/-- 0
66 dist_freq/32-56/++ 0 91 dist_freq/10-13/++ 0
67 dist_freq/56-100/+- 1 92 dist_freq/13-18/+- 0
68 dist_freq/56-100/-+ 0 93 dist_freq/13-18/-+ 0
69 dist_freq/56-100/-- 0 94 dist_freq/13-18/-- 0
70 dist_freq/56-100/++ 0 95 dist_freq/13-18/++ 0
71 dist_freq/100-178/+- 3 96 dist_freq/18-24/+- 0
72 dist_freq/100-178/-+ 0 97 dist_freq/18-24/-+ 0
73 dist_freq/100-178/-- 0 98 dist_freq/18-24/-- 0
74 dist_freq/100-178/++ 0 99 dist_freq/18-24/++ 0
75 dist_freq/178-316/+- 53 100 dist_freq/24-32/+- 0
76 dist_freq/178-316/-+ 0 101 dist_freq/24-32/-+ 0
77 dist_freq/178-316/-- 0 102 dist_freq/24-32/-- 0
78 dist_freq/178-316/++ 0 103 dist_freq/24-32/++ 0
79 dist_freq/316-562/+- 236 104 dist_freq/32-42/+- 0
80 dist_freq/316-562/-+ 0 105 dist_freq/32-42/-+ 0
81 dist_freq/316-562/-- 0 106 dist_freq/32-42/-- 0
82 dist_freq/316-562/++ 0 107 dist_freq/32-42/++ 0
83 dist_freq/562-1000/+- 0 108 dist_freq/42-56/+- 0
84 dist_freq/562-1000/-+ 0 109 dist_freq/42-56/-+ 0
85 dist_freq/562-1000/-- 0 110 dist_freq/42-56/-- 0
86 dist_freq/562-1000/++ 0 111 dist_freq/42-56/++ 0
87 dist_freq/1000-1778/+- 1 112 dist_freq/56-75/+- 0
88 dist_freq/1000-1778/-+ 0 113 dist_freq/56-75/-+ 0
89 dist_freq/1000-1778/-- 0 114 dist_freq/56-75/-- 0
90 dist_freq/1000-1778/++ 0 115 dist_freq/56-75/++ 0
91 dist_freq/1778-3162/+- 0 116 dist_freq/75-100/+- 1
92 dist_freq/1778-3162/-+ 0 117 dist_freq/75-100/-+ 0
93 dist_freq/1778-3162/-- 0 118 dist_freq/75-100/-- 0
94 dist_freq/1778-3162/++ 0 119 dist_freq/75-100/++ 0
95 dist_freq/3162-5623/+- 0 120 dist_freq/100-133/+- 1
96 dist_freq/3162-5623/-+ 0 121 dist_freq/100-133/-+ 0
97 dist_freq/3162-5623/-- 0 122 dist_freq/100-133/-- 0
98 dist_freq/3162-5623/++ 0 123 dist_freq/100-133/++ 0
99 dist_freq/5623-10000/+- 2 124 dist_freq/133-178/+- 2
100 dist_freq/5623-10000/-+ 0 125 dist_freq/133-178/-+ 0
101 dist_freq/5623-10000/-- 0 126 dist_freq/133-178/-- 0
102 dist_freq/5623-10000/++ 0 127 dist_freq/133-178/++ 0
103 dist_freq/10000-17783/+- 1 128 dist_freq/178-237/+- 3
104 dist_freq/10000-17783/-+ 1 129 dist_freq/178-237/-+ 0
105 dist_freq/10000-17783/-- 0 130 dist_freq/178-237/-- 0
106 dist_freq/10000-17783/++ 0 131 dist_freq/178-237/++ 0
107 dist_freq/17783-31623/+- 1 132 dist_freq/237-316/+- 50
108 dist_freq/17783-31623/-+ 0 133 dist_freq/237-316/-+ 0
109 dist_freq/17783-31623/-- 0 134 dist_freq/237-316/-- 0
110 dist_freq/17783-31623/++ 0 135 dist_freq/237-316/++ 0
111 dist_freq/31623-56234/+- 0 136 dist_freq/316-422/+- 135
112 dist_freq/31623-56234/-+ 0 137 dist_freq/316-422/-+ 0
113 dist_freq/31623-56234/-- 0 138 dist_freq/316-422/-- 0
114 dist_freq/31623-56234/++ 1 139 dist_freq/316-422/++ 0
115 dist_freq/56234-100000/+- 2 140 dist_freq/422-562/+- 101
116 dist_freq/56234-100000/-+ 0 141 dist_freq/422-562/-+ 0
117 dist_freq/56234-100000/-- 1 142 dist_freq/422-562/-- 0
118 dist_freq/56234-100000/++ 1 143 dist_freq/422-562/++ 0
119 dist_freq/100000-177828/+- 1 144 dist_freq/562-750/+- 0
120 dist_freq/100000-177828/-+ 0 145 dist_freq/562-750/-+ 0
121 dist_freq/100000-177828/-- 1 146 dist_freq/562-750/-- 0
122 dist_freq/100000-177828/++ 2 147 dist_freq/562-750/++ 0
123 dist_freq/177828-316228/+- 0 148 dist_freq/750-1000/+- 0
124 dist_freq/177828-316228/-+ 0 149 dist_freq/750-1000/-+ 0
125 dist_freq/177828-316228/-- 0 150 dist_freq/750-1000/-- 0
126 dist_freq/177828-316228/++ 0 151 dist_freq/750-1000/++ 0
127 dist_freq/316228-562341/+- 0 152 dist_freq/1000-1334/+- 0
128 dist_freq/316228-562341/-+ 0 153 dist_freq/1000-1334/-+ 0
129 dist_freq/316228-562341/-- 0 154 dist_freq/1000-1334/-- 0
130 dist_freq/316228-562341/++ 0 155 dist_freq/1000-1334/++ 0
131 dist_freq/562341-1000000/+- 0 156 dist_freq/1334-1778/+- 1
132 dist_freq/562341-1000000/-+ 0 157 dist_freq/1334-1778/-+ 0
133 dist_freq/562341-1000000/-- 0 158 dist_freq/1334-1778/-- 0
134 dist_freq/562341-1000000/++ 0 159 dist_freq/1334-1778/++ 0
135 dist_freq/1000000-1778279/+- 0 160 dist_freq/1778-2371/+- 0
136 dist_freq/1000000-1778279/-+ 0 161 dist_freq/1778-2371/-+ 0
137 dist_freq/1000000-1778279/-- 0 162 dist_freq/1778-2371/-- 0
138 dist_freq/1000000-1778279/++ 0 163 dist_freq/1778-2371/++ 0
139 dist_freq/1778279-3162278/+- 0 164 dist_freq/2371-3162/+- 0
140 dist_freq/1778279-3162278/-+ 0 165 dist_freq/2371-3162/-+ 0
141 dist_freq/1778279-3162278/-- 0 166 dist_freq/2371-3162/-- 0
142 dist_freq/1778279-3162278/++ 0 167 dist_freq/2371-3162/++ 0
143 dist_freq/3162278-5623413/+- 0 168 dist_freq/3162-4217/+- 0
144 dist_freq/3162278-5623413/-+ 0 169 dist_freq/3162-4217/-+ 0
145 dist_freq/3162278-5623413/-- 0 170 dist_freq/3162-4217/-- 0
146 dist_freq/3162278-5623413/++ 0 171 dist_freq/3162-4217/++ 0
147 dist_freq/5623413-10000000/+- 0 172 dist_freq/4217-5623/+- 0
148 dist_freq/5623413-10000000/-+ 0 173 dist_freq/4217-5623/-+ 0
149 dist_freq/5623413-10000000/-- 0 174 dist_freq/4217-5623/-- 0
150 dist_freq/5623413-10000000/++ 0 175 dist_freq/4217-5623/++ 0
151 dist_freq/10000000-17782794/+- 0 176 dist_freq/5623-7499/+- 0
152 dist_freq/10000000-17782794/-+ 0 177 dist_freq/5623-7499/-+ 0
153 dist_freq/10000000-17782794/-- 0 178 dist_freq/5623-7499/-- 0
154 dist_freq/10000000-17782794/++ 0 179 dist_freq/5623-7499/++ 0
155 dist_freq/17782794-31622777/+- 0 180 dist_freq/7499-10000/+- 2
156 dist_freq/17782794-31622777/-+ 0 181 dist_freq/7499-10000/-+ 0
157 dist_freq/17782794-31622777/-- 0 182 dist_freq/7499-10000/-- 0
158 dist_freq/17782794-31622777/++ 0 183 dist_freq/7499-10000/++ 0
159 dist_freq/31622777-56234133/+- 0 184 dist_freq/10000-13335/+- 1
160 dist_freq/31622777-56234133/-+ 0 185 dist_freq/10000-13335/-+ 1
161 dist_freq/31622777-56234133/-- 0 186 dist_freq/10000-13335/-- 0
162 dist_freq/31622777-56234133/++ 0 187 dist_freq/10000-13335/++ 0
163 dist_freq/56234133-100000000/+- 0 188 dist_freq/13335-17783/+- 0
164 dist_freq/56234133-100000000/-+ 0 189 dist_freq/13335-17783/-+ 0
165 dist_freq/56234133-100000000/-- 0 190 dist_freq/13335-17783/-- 0
166 dist_freq/56234133-100000000/++ 0 191 dist_freq/13335-17783/++ 0
167 dist_freq/100000000-177827941/+- 0 192 dist_freq/17783-23714/+- 1
168 dist_freq/100000000-177827941/-+ 0 193 dist_freq/17783-23714/-+ 0
169 dist_freq/100000000-177827941/-- 0 194 dist_freq/17783-23714/-- 0
170 dist_freq/100000000-177827941/++ 0 195 dist_freq/17783-23714/++ 0
171 dist_freq/177827941-316227766/+- 0 196 dist_freq/23714-31623/+- 0
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173 dist_freq/177827941-316227766/-- 0 198 dist_freq/23714-31623/-- 0
174 dist_freq/177827941-316227766/++ 0 199 dist_freq/23714-31623/++ 0
175 dist_freq/316227766-562341325/+- 0 200 dist_freq/31623-42170/+- 0
176 dist_freq/316227766-562341325/-+ 0 201 dist_freq/31623-42170/-+ 0
177 dist_freq/316227766-562341325/-- 0 202 dist_freq/31623-42170/-- 0
178 dist_freq/316227766-562341325/++ 0 203 dist_freq/31623-42170/++ 0
179 dist_freq/562341325-1000000000/+- 0 204 dist_freq/42170-56234/+- 0
180 dist_freq/562341325-1000000000/-+ 0 205 dist_freq/42170-56234/-+ 0
181 dist_freq/562341325-1000000000/-- 0 206 dist_freq/42170-56234/-- 0
182 dist_freq/562341325-1000000000/++ 0 207 dist_freq/42170-56234/++ 1
183 dist_freq/562341325+/+- 0 208 dist_freq/56234-74989/+- 2
184 dist_freq/562341325+/-+ 0 209 dist_freq/56234-74989/-+ 0
185 dist_freq/562341325+/-- 0 210 dist_freq/56234-74989/-- 1
186 dist_freq/562341325+/++ 0 211 dist_freq/56234-74989/++ 0
212 dist_freq/74989-100000/+- 0
213 dist_freq/74989-100000/-+ 0
214 dist_freq/74989-100000/-- 0
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216 dist_freq/100000-133352/+- 1
217 dist_freq/100000-133352/-+ 0
218 dist_freq/100000-133352/-- 1
219 dist_freq/100000-133352/++ 1
220 dist_freq/133352-177828/+- 0
221 dist_freq/133352-177828/-+ 0
222 dist_freq/133352-177828/-- 0
223 dist_freq/133352-177828/++ 1
224 dist_freq/177828-237137/+- 0
225 dist_freq/177828-237137/-+ 0
226 dist_freq/177828-237137/-- 0
227 dist_freq/177828-237137/++ 0
228 dist_freq/237137-316228/+- 0
229 dist_freq/237137-316228/-+ 0
230 dist_freq/237137-316228/-- 0
231 dist_freq/237137-316228/++ 0
232 dist_freq/316228-421697/+- 0
233 dist_freq/316228-421697/-+ 0
234 dist_freq/316228-421697/-- 0
235 dist_freq/316228-421697/++ 0
236 dist_freq/421697-562341/+- 0
237 dist_freq/421697-562341/-+ 0
238 dist_freq/421697-562341/-- 0
239 dist_freq/421697-562341/++ 0
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241 dist_freq/562341-749894/-+ 0
242 dist_freq/562341-749894/-- 0
243 dist_freq/562341-749894/++ 0
244 dist_freq/749894-1000000/+- 0
245 dist_freq/749894-1000000/-+ 0
246 dist_freq/749894-1000000/-- 0
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261 dist_freq/2371374-3162278/-+ 0
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