Mercurial > repos > iuc > pairtools_parse

comparison test-data/pairs_output_with_chromsize.stats @ 8:44cb74c154bc draft

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planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author iuc
date Tue, 30 Apr 2024 12:03:00 +0000
parents a98caf2d8309
children
comparison
equal deleted inserted replaced
7:b0a1f128fa15 8:44cb74c154bc
27 summary/frac_cis_10kb+ 0.15192743764172337 27 summary/frac_cis_10kb+ 0.15192743764172337
28 summary/frac_cis_20kb+ 0.1383219954648526 28 summary/frac_cis_20kb+ 0.1383219954648526
29 summary/frac_cis_40kb+ 0.1383219954648526 29 summary/frac_cis_40kb+ 0.1383219954648526
30 summary/frac_dups 0.0 30 summary/frac_dups 0.0
31 summary/complexity_naive nan 31 summary/complexity_naive nan
32 summary/dist_freq_convergence/convergence_dist 421697
33 summary/dist_freq_convergence/strands_w_max_convergence_dist ++
34 summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05
35 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 25
36 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 26
37 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 7
38 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 383
39 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 441
40 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0
41 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.05668934240362812
42 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.05895691609977324
43 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.015873015873015872
44 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.8684807256235828
45 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0
46 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0
47 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.05668934240362812
48 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.05895691609977324
49 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.015873015873015872
50 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.8684807256235828
51 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0
52 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0
53 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.05668934240362812
54 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.05895691609977324
55 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.015873015873015872
56 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.8684807256235828
57 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0
58 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0
32 chrom_freq/Test_seq/Test_seq 441 59 chrom_freq/Test_seq/Test_seq 441
33 dist_freq/0-1/+- 0 60 dist_freq/0-1/+- 0
34 dist_freq/0-1/-+ 0 61 dist_freq/0-1/-+ 0
35 dist_freq/0-1/-- 0 62 dist_freq/0-1/-- 0
36 dist_freq/0-1/++ 0 63 dist_freq/0-1/++ 0
40 dist_freq/1-2/++ 0 67 dist_freq/1-2/++ 0
41 dist_freq/2-3/+- 0 68 dist_freq/2-3/+- 0
42 dist_freq/2-3/-+ 0 69 dist_freq/2-3/-+ 0
43 dist_freq/2-3/-- 0 70 dist_freq/2-3/-- 0
44 dist_freq/2-3/++ 0 71 dist_freq/2-3/++ 0
45 dist_freq/3-6/+- 0 72 dist_freq/3-4/+- 0
46 dist_freq/3-6/-+ 0 73 dist_freq/3-4/-+ 0
47 dist_freq/3-6/-- 0 74 dist_freq/3-4/-- 0
48 dist_freq/3-6/++ 0 75 dist_freq/3-4/++ 0
49 dist_freq/6-10/+- 0 76 dist_freq/4-6/+- 0
50 dist_freq/6-10/-+ 0 77 dist_freq/4-6/-+ 0
51 dist_freq/6-10/-- 0 78 dist_freq/4-6/-- 0
52 dist_freq/6-10/++ 0 79 dist_freq/4-6/++ 0
53 dist_freq/10-18/+- 0 80 dist_freq/6-7/+- 0
54 dist_freq/10-18/-+ 0 81 dist_freq/6-7/-+ 0
55 dist_freq/10-18/-- 0 82 dist_freq/6-7/-- 0
56 dist_freq/10-18/++ 0 83 dist_freq/6-7/++ 0
57 dist_freq/18-32/+- 0 84 dist_freq/7-10/+- 0
58 dist_freq/18-32/-+ 0 85 dist_freq/7-10/-+ 0
59 dist_freq/18-32/-- 0 86 dist_freq/7-10/-- 0
60 dist_freq/18-32/++ 0 87 dist_freq/7-10/++ 0
61 dist_freq/32-56/+- 7 88 dist_freq/10-13/+- 0
62 dist_freq/32-56/-+ 0 89 dist_freq/10-13/-+ 0
63 dist_freq/32-56/-- 0 90 dist_freq/10-13/-- 0
64 dist_freq/32-56/++ 0 91 dist_freq/10-13/++ 0
65 dist_freq/56-100/+- 9 92 dist_freq/13-18/+- 0
66 dist_freq/56-100/-+ 0 93 dist_freq/13-18/-+ 0
67 dist_freq/56-100/-- 0 94 dist_freq/13-18/-- 0
68 dist_freq/56-100/++ 0 95 dist_freq/13-18/++ 0
69 dist_freq/100-178/+- 5 96 dist_freq/18-24/+- 0
70 dist_freq/100-178/-+ 0 97 dist_freq/18-24/-+ 0
71 dist_freq/100-178/-- 0 98 dist_freq/18-24/-- 0
72 dist_freq/100-178/++ 0 99 dist_freq/18-24/++ 0
73 dist_freq/178-316/+- 60 100 dist_freq/24-32/+- 0
74 dist_freq/178-316/-+ 0 101 dist_freq/24-32/-+ 0
75 dist_freq/178-316/-- 0 102 dist_freq/24-32/-- 0
76 dist_freq/178-316/++ 0 103 dist_freq/24-32/++ 0
77 dist_freq/316-562/+- 284 104 dist_freq/32-42/+- 0
78 dist_freq/316-562/-+ 0 105 dist_freq/32-42/-+ 0
79 dist_freq/316-562/-- 0 106 dist_freq/32-42/-- 0
80 dist_freq/316-562/++ 0 107 dist_freq/32-42/++ 0
81 dist_freq/562-1000/+- 1 108 dist_freq/42-56/+- 7
82 dist_freq/562-1000/-+ 0 109 dist_freq/42-56/-+ 0
83 dist_freq/562-1000/-- 0 110 dist_freq/42-56/-- 0
84 dist_freq/562-1000/++ 0 111 dist_freq/42-56/++ 0
85 dist_freq/1000-1778/+- 1 112 dist_freq/56-75/+- 7
86 dist_freq/1000-1778/-+ 0 113 dist_freq/56-75/-+ 0
87 dist_freq/1000-1778/-- 1 114 dist_freq/56-75/-- 0
88 dist_freq/1000-1778/++ 0 115 dist_freq/56-75/++ 0
89 dist_freq/1778-3162/+- 1 116 dist_freq/75-100/+- 2
90 dist_freq/1778-3162/-+ 0 117 dist_freq/75-100/-+ 0
91 dist_freq/1778-3162/-- 1 118 dist_freq/75-100/-- 0
92 dist_freq/1778-3162/++ 1 119 dist_freq/75-100/++ 0
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94 dist_freq/3162-5623/-+ 0 121 dist_freq/100-133/-+ 0
95 dist_freq/3162-5623/-- 0 122 dist_freq/100-133/-- 0
96 dist_freq/3162-5623/++ 0 123 dist_freq/100-133/++ 0
97 dist_freq/5623-10000/+- 2 124 dist_freq/133-178/+- 2
98 dist_freq/5623-10000/-+ 0 125 dist_freq/133-178/-+ 0
99 dist_freq/5623-10000/-- 0 126 dist_freq/133-178/-- 0
100 dist_freq/5623-10000/++ 1 127 dist_freq/133-178/++ 0
101 dist_freq/10000-17783/+- 2 128 dist_freq/178-237/+- 3
102 dist_freq/10000-17783/-+ 2 129 dist_freq/178-237/-+ 0
103 dist_freq/10000-17783/-- 0 130 dist_freq/178-237/-- 0
104 dist_freq/10000-17783/++ 1 131 dist_freq/178-237/++ 0
105 dist_freq/17783-31623/+- 1 132 dist_freq/237-316/+- 57
106 dist_freq/17783-31623/-+ 0 133 dist_freq/237-316/-+ 0
107 dist_freq/17783-31623/-- 0 134 dist_freq/237-316/-- 0
108 dist_freq/17783-31623/++ 0 135 dist_freq/237-316/++ 0
109 dist_freq/31623-56234/+- 0 136 dist_freq/316-422/+- 171
110 dist_freq/31623-56234/-+ 1 137 dist_freq/316-422/-+ 0
111 dist_freq/31623-56234/-- 21 138 dist_freq/316-422/-- 0
112 dist_freq/31623-56234/++ 10 139 dist_freq/316-422/++ 0
113 dist_freq/56234-100000/+- 3 140 dist_freq/422-562/+- 113
114 dist_freq/56234-100000/-+ 0 141 dist_freq/422-562/-+ 0
115 dist_freq/56234-100000/-- 1 142 dist_freq/422-562/-- 0
116 dist_freq/56234-100000/++ 3 143 dist_freq/422-562/++ 0
117 dist_freq/100000-177828/+- 3 144 dist_freq/562-750/+- 0
118 dist_freq/100000-177828/-+ 3 145 dist_freq/562-750/-+ 0
119 dist_freq/100000-177828/-- 2 146 dist_freq/562-750/-- 0
120 dist_freq/100000-177828/++ 7 147 dist_freq/562-750/++ 0
121 dist_freq/177828-316228/+- 4 148 dist_freq/750-1000/+- 1
122 dist_freq/177828-316228/-+ 0 149 dist_freq/750-1000/-+ 0
123 dist_freq/177828-316228/-- 0 150 dist_freq/750-1000/-- 0
124 dist_freq/177828-316228/++ 2 151 dist_freq/750-1000/++ 0
125 dist_freq/316228-562341/+- 0 152 dist_freq/1000-1334/+- 0
126 dist_freq/316228-562341/-+ 1 153 dist_freq/1000-1334/-+ 0
127 dist_freq/316228-562341/-- 0 154 dist_freq/1000-1334/-- 1
128 dist_freq/316228-562341/++ 0 155 dist_freq/1000-1334/++ 0
129 dist_freq/562341-1000000/+- 0 156 dist_freq/1334-1778/+- 1
130 dist_freq/562341-1000000/-+ 0 157 dist_freq/1334-1778/-+ 0
131 dist_freq/562341-1000000/-- 0 158 dist_freq/1334-1778/-- 0
132 dist_freq/562341-1000000/++ 0 159 dist_freq/1334-1778/++ 0
133 dist_freq/1000000-1778279/+- 0 160 dist_freq/1778-2371/+- 0
134 dist_freq/1000000-1778279/-+ 0 161 dist_freq/1778-2371/-+ 0
135 dist_freq/1000000-1778279/-- 0 162 dist_freq/1778-2371/-- 0
136 dist_freq/1000000-1778279/++ 0 163 dist_freq/1778-2371/++ 1
137 dist_freq/1778279-3162278/+- 0 164 dist_freq/2371-3162/+- 1
138 dist_freq/1778279-3162278/-+ 0 165 dist_freq/2371-3162/-+ 0
139 dist_freq/1778279-3162278/-- 0 166 dist_freq/2371-3162/-- 1
140 dist_freq/1778279-3162278/++ 0 167 dist_freq/2371-3162/++ 0
141 dist_freq/3162278-5623413/+- 0 168 dist_freq/3162-4217/+- 0
142 dist_freq/3162278-5623413/-+ 0 169 dist_freq/3162-4217/-+ 0
143 dist_freq/3162278-5623413/-- 0 170 dist_freq/3162-4217/-- 0
144 dist_freq/3162278-5623413/++ 0 171 dist_freq/3162-4217/++ 0
145 dist_freq/5623413-10000000/+- 0 172 dist_freq/4217-5623/+- 0
146 dist_freq/5623413-10000000/-+ 0 173 dist_freq/4217-5623/-+ 0
147 dist_freq/5623413-10000000/-- 0 174 dist_freq/4217-5623/-- 0
148 dist_freq/5623413-10000000/++ 0 175 dist_freq/4217-5623/++ 0
149 dist_freq/10000000-17782794/+- 0 176 dist_freq/5623-7499/+- 0
150 dist_freq/10000000-17782794/-+ 0 177 dist_freq/5623-7499/-+ 0
151 dist_freq/10000000-17782794/-- 0 178 dist_freq/5623-7499/-- 0
152 dist_freq/10000000-17782794/++ 0 179 dist_freq/5623-7499/++ 1
153 dist_freq/17782794-31622777/+- 0 180 dist_freq/7499-10000/+- 2
154 dist_freq/17782794-31622777/-+ 0 181 dist_freq/7499-10000/-+ 0
155 dist_freq/17782794-31622777/-- 0 182 dist_freq/7499-10000/-- 0
156 dist_freq/17782794-31622777/++ 0 183 dist_freq/7499-10000/++ 0
157 dist_freq/31622777-56234133/+- 0 184 dist_freq/10000-13335/+- 1
158 dist_freq/31622777-56234133/-+ 0 185 dist_freq/10000-13335/-+ 1
159 dist_freq/31622777-56234133/-- 0 186 dist_freq/10000-13335/-- 0
160 dist_freq/31622777-56234133/++ 0 187 dist_freq/10000-13335/++ 1
161 dist_freq/56234133-100000000/+- 0 188 dist_freq/13335-17783/+- 1
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163 dist_freq/56234133-100000000/-- 0 190 dist_freq/13335-17783/-- 0
164 dist_freq/56234133-100000000/++ 0 191 dist_freq/13335-17783/++ 0
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179 dist_freq/562341325-1000000000/-- 0 206 dist_freq/42170-56234/-- 21
180 dist_freq/562341325-1000000000/++ 0 207 dist_freq/42170-56234/++ 10
181 dist_freq/562341325+/+- 0 208 dist_freq/56234-74989/+- 2
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221 dist_freq/133352-177828/-+ 3
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225 dist_freq/177828-237137/-+ 0
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344 dist_freq/1000000000+/+- 0
345 dist_freq/1000000000+/-+ 0
346 dist_freq/1000000000+/-- 0
347 dist_freq/1000000000+/++ 0
185 chromsizes/Test_seq 450060 348 chromsizes/Test_seq 450060