Mercurial > repos > iuc > pairtools_parse

comparison test-data/pairs_output_yaml.stats @ 8:44cb74c154bc draft

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planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
author iuc
date Tue, 30 Apr 2024 12:03:00 +0000
parents a98caf2d8309
children
comparison
equal deleted inserted replaced
7:b0a1f128fa15 8:44cb74c154bc
1 no_filter: 1 no_filter:
2 total: 592 2 total: 592
3 total_unmapped: 4 3 total_unmapped: 4
4 total_single_sided_mapped: 147 4 total_single_sided_mapped: 147
5 total_mapped: 441 5 total_mapped: 441
6 total_dups: 0
7 total_nodups: 441 6 total_nodups: 441
8 cis: 441 7 cis: 441
9 trans: 0
10 pair_types: 8 pair_types:
11 UU: 405 9 UU: 405
12 NR: 119 10 NR: 119
13 MU: 21 11 MU: 21
14 UR: 19 12 UR: 19
30 frac_cis_10kb+: 0.15192743764172337 28 frac_cis_10kb+: 0.15192743764172337
31 frac_cis_20kb+: 0.1383219954648526 29 frac_cis_20kb+: 0.1383219954648526
32 frac_cis_40kb+: 0.1383219954648526 30 frac_cis_40kb+: 0.1383219954648526
33 frac_dups: 0.0 31 frac_dups: 0.0
34 complexity_naive: .nan 32 complexity_naive: .nan
33 dist_freq_convergence:
34 convergence_dist: 421697
35 strands_w_max_convergence_dist: ++
36 convergence_rel_diff_threshold: 0.05
37 n_cis_pairs_below_convergence_dist:
38 ++: 25
39 --: 26
40 -+: 7
41 +-: 383
42 n_cis_pairs_below_convergence_dist_all_strands: 441
43 n_cis_pairs_above_convergence_dist_all_strands: 0
44 frac_cis_in_cis_below_convergence_dist:
45 ++: 0.05668934240362812
46 --: 0.05895691609977324
47 -+: 0.015873015873015872
48 +-: 0.8684807256235828
49 frac_cis_in_cis_below_convergence_dist_all_strands: 1.0
50 frac_cis_in_cis_above_convergence_dist_all_strands: 0.0
51 frac_total_mapped_in_cis_below_convergence_dist:
52 ++: 0.05668934240362812
53 --: 0.05895691609977324
54 -+: 0.015873015873015872
55 +-: 0.8684807256235828
56 frac_total_mapped_in_cis_below_convergence_dist_all_strands: 1.0
57 frac_total_mapped_in_cis_above_convergence_dist_all_strands: 0.0
58 frac_total_nodups_in_cis_below_convergence_dist:
59 ++: 0.05668934240362812
60 --: 0.05895691609977324
61 -+: 0.015873015873015872
62 +-: 0.8684807256235828
63 frac_total_nodups_in_cis_below_convergence_dist_all_strands: 1.0
64 frac_total_nodups_in_cis_above_convergence_dist_all_strands: 0.0
35 chrom_freq: 65 chrom_freq:
36 Test_seq/Test_seq: 441 66 Test_seq/Test_seq: 441
37 dist_freq: 67 dist_freq:
38 +-: 68 +-:
39 0: 0 69 0: 0
40 1: 0 70 1: 0
41 2: 0 71 2: 0
42 3: 0 72 3: 0
73 4: 0
43 6: 0 74 6: 0
75 7: 0
44 10: 0 76 10: 0
77 13: 0
45 18: 0 78 18: 0
46 32: 7 79 24: 0
47 56: 9 80 32: 0
48 100: 5 81 42: 7
49 178: 60 82 56: 7
50 316: 284 83 75: 2
51 562: 1 84 100: 3
52 1000: 1 85 133: 2
53 1778: 1 86 178: 3
87 237: 57
88 316: 171
89 422: 113
90 562: 0
91 750: 1
92 1000: 0
93 1334: 1
94 1778: 0
95 2371: 1
54 3162: 0 96 3162: 0
55 5623: 2 97 4217: 0
56 10000: 2 98 5623: 0
99 7499: 2
100 10000: 1
101 13335: 1
57 17783: 1 102 17783: 1
103 23714: 0
58 31623: 0 104 31623: 0
59 56234: 3 105 42170: 0
60 100000: 3 106 56234: 2
61 177828: 4 107 74989: 1
108 100000: 1
109 133352: 2
110 177828: 3
111 237137: 1
62 316228: 0 112 316228: 0
113 421697: 0
63 562341: 0 114 562341: 0
115 749894: 0
64 1000000: 0 116 1000000: 0
117 1333521: 0
65 1778279: 0 118 1778279: 0
119 2371374: 0
66 3162278: 0 120 3162278: 0
121 4216965: 0
67 5623413: 0 122 5623413: 0
123 7498942: 0
68 10000000: 0 124 10000000: 0
125 13335214: 0
69 17782794: 0 126 17782794: 0
127 23713737: 0
70 31622777: 0 128 31622777: 0
129 42169650: 0
71 56234133: 0 130 56234133: 0
131 74989421: 0
72 100000000: 0 132 100000000: 0
133 133352143: 0
73 177827941: 0 134 177827941: 0
135 237137371: 0
74 316227766: 0 136 316227766: 0
137 421696503: 0
75 562341325: 0 138 562341325: 0
139 749894209: 0
76 1000000000: 0 140 1000000000: 0
77 -+: 141 -+:
78 0: 0 142 0: 0
79 1: 0 143 1: 0
80 2: 0 144 2: 0
81 3: 0 145 3: 0
146 4: 0
82 6: 0 147 6: 0
148 7: 0
83 10: 0 149 10: 0
150 13: 0
84 18: 0 151 18: 0
152 24: 0
85 32: 0 153 32: 0
154 42: 0
86 56: 0 155 56: 0
156 75: 0
87 100: 0 157 100: 0
158 133: 0
88 178: 0 159 178: 0
160 237: 0
89 316: 0 161 316: 0
162 422: 0
90 562: 0 163 562: 0
164 750: 0
91 1000: 0 165 1000: 0
166 1334: 0
92 1778: 0 167 1778: 0
168 2371: 0
93 3162: 0 169 3162: 0
170 4217: 0
94 5623: 0 171 5623: 0
95 10000: 2 172 7499: 0
173 10000: 1
174 13335: 1
96 17783: 0 175 17783: 0
97 31623: 1 176 23714: 0
177 31623: 0
178 42170: 1
98 56234: 0 179 56234: 0
99 100000: 3 180 74989: 0
181 100000: 0
182 133352: 3
100 177828: 0 183 177828: 0
184 237137: 0
101 316228: 1 185 316228: 1
186 421697: 0
102 562341: 0 187 562341: 0
188 749894: 0
103 1000000: 0 189 1000000: 0
190 1333521: 0
104 1778279: 0 191 1778279: 0
192 2371374: 0
105 3162278: 0 193 3162278: 0
194 4216965: 0
106 5623413: 0 195 5623413: 0
196 7498942: 0
107 10000000: 0 197 10000000: 0
198 13335214: 0
108 17782794: 0 199 17782794: 0
200 23713737: 0
109 31622777: 0 201 31622777: 0
202 42169650: 0
110 56234133: 0 203 56234133: 0
204 74989421: 0
111 100000000: 0 205 100000000: 0
206 133352143: 0
112 177827941: 0 207 177827941: 0
208 237137371: 0
113 316227766: 0 209 316227766: 0
210 421696503: 0
114 562341325: 0 211 562341325: 0
212 749894209: 0
115 1000000000: 0 213 1000000000: 0
116 --: 214 --:
117 0: 0 215 0: 0
118 1: 0 216 1: 0
119 2: 0 217 2: 0
120 3: 0 218 3: 0
219 4: 0
121 6: 0 220 6: 0
221 7: 0
122 10: 0 222 10: 0
223 13: 0
123 18: 0 224 18: 0
225 24: 0
124 32: 0 226 32: 0
227 42: 0
125 56: 0 228 56: 0
229 75: 0
126 100: 0 230 100: 0
231 133: 0
127 178: 0 232 178: 0
233 237: 0
128 316: 0 234 316: 0
235 422: 0
129 562: 0 236 562: 0
237 750: 0
130 1000: 1 238 1000: 1
131 1778: 1 239 1334: 0
240 1778: 0
241 2371: 1
132 3162: 0 242 3162: 0
243 4217: 0
133 5623: 0 244 5623: 0
245 7499: 0
134 10000: 0 246 10000: 0
247 13335: 0
135 17783: 0 248 17783: 0
136 31623: 21 249 23714: 0
250 31623: 0
251 42170: 21
137 56234: 1 252 56234: 1
253 74989: 0
138 100000: 2 254 100000: 2
255 133352: 0
139 177828: 0 256 177828: 0
257 237137: 0
140 316228: 0 258 316228: 0
259 421697: 0
141 562341: 0 260 562341: 0
261 749894: 0
142 1000000: 0 262 1000000: 0
263 1333521: 0
143 1778279: 0 264 1778279: 0
265 2371374: 0
144 3162278: 0 266 3162278: 0
267 4216965: 0
145 5623413: 0 268 5623413: 0
269 7498942: 0
146 10000000: 0 270 10000000: 0
271 13335214: 0
147 17782794: 0 272 17782794: 0
273 23713737: 0
148 31622777: 0 274 31622777: 0
275 42169650: 0
149 56234133: 0 276 56234133: 0
277 74989421: 0
150 100000000: 0 278 100000000: 0
279 133352143: 0
151 177827941: 0 280 177827941: 0
281 237137371: 0
152 316227766: 0 282 316227766: 0
283 421696503: 0
153 562341325: 0 284 562341325: 0
285 749894209: 0
154 1000000000: 0 286 1000000000: 0
155 ++: 287 ++:
156 0: 0 288 0: 0
157 1: 0 289 1: 0
158 2: 0 290 2: 0
159 3: 0 291 3: 0
292 4: 0
160 6: 0 293 6: 0
294 7: 0
161 10: 0 295 10: 0
296 13: 0
162 18: 0 297 18: 0
298 24: 0
163 32: 0 299 32: 0
300 42: 0
164 56: 0 301 56: 0
302 75: 0
165 100: 0 303 100: 0
304 133: 0
166 178: 0 305 178: 0
306 237: 0
167 316: 0 307 316: 0
308 422: 0
168 562: 0 309 562: 0
310 750: 0
169 1000: 0 311 1000: 0
312 1334: 0
170 1778: 1 313 1778: 1
314 2371: 0
171 3162: 0 315 3162: 0
316 4217: 0
172 5623: 1 317 5623: 1
318 7499: 0
173 10000: 1 319 10000: 1
320 13335: 0
174 17783: 0 321 17783: 0
175 31623: 10 322 23714: 0
176 56234: 3 323 31623: 0
177 100000: 7 324 42170: 10
325 56234: 2
326 74989: 1
327 100000: 4
328 133352: 3
178 177828: 2 329 177828: 2
330 237137: 0
179 316228: 0 331 316228: 0
332 421697: 0
180 562341: 0 333 562341: 0
334 749894: 0
181 1000000: 0 335 1000000: 0
336 1333521: 0
182 1778279: 0 337 1778279: 0
338 2371374: 0
183 3162278: 0 339 3162278: 0
340 4216965: 0
184 5623413: 0 341 5623413: 0
342 7498942: 0
185 10000000: 0 343 10000000: 0
344 13335214: 0
186 17782794: 0 345 17782794: 0
346 23713737: 0
187 31622777: 0 347 31622777: 0
348 42169650: 0
188 56234133: 0 349 56234133: 0
350 74989421: 0
189 100000000: 0 351 100000000: 0
352 133352143: 0
190 177827941: 0 353 177827941: 0
354 237137371: 0
191 316227766: 0 355 316227766: 0
356 421696503: 0
192 562341325: 0 357 562341325: 0
358 749894209: 0
193 1000000000: 0 359 1000000000: 0
194 chromsizes: 360 chromsizes:
195 Test_seq: 450060 361 Test_seq: 450060