Mercurial > repos > iuc > pairtools_parse

diff test-data/output_dedup_pairs.stats @ 3:09145cd90202 draft

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planemo upload for repository https://github.com/open2c/pairtools commit e9ebcf7ac032fafaa445e654b245df679a4bbf18
author iuc
date Thu, 04 Apr 2024 19:40:47 +0000
parents
children 44cb74c154bc
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output_dedup_pairs.stats	Thu Apr 04 19:40:47 2024 +0000
@@ -0,0 +1,275 @@
+total	1992
+total_unmapped	914
+total_single_sided_mapped	287
+total_mapped	791
+total_dups	9
+total_nodups	782
+cis	597
+trans	185
+pair_types/NN	853
+pair_types/UU	782
+pair_types/NU	234
+pair_types/MU	53
+pair_types/MM	40
+pair_types/NM	21
+pair_types/DD	9
+cis_1kb+	185
+cis_2kb+	171
+cis_4kb+	151
+cis_10kb+	114
+cis_20kb+	80
+cis_40kb+	46
+summary/frac_cis	0.7634271099744245
+summary/frac_cis_1kb+	0.23657289002557544
+summary/frac_cis_2kb+	0.2186700767263427
+summary/frac_cis_4kb+	0.19309462915601022
+summary/frac_cis_10kb+	0.14578005115089515
+summary/frac_cis_20kb+	0.10230179028132992
+summary/frac_cis_40kb+	0.058823529411764705
+summary/frac_dups	0.011378002528445006
+summary/complexity_naive	34495.88583157276
+chrom_freq/chrIV/chrIV	83
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