Mercurial > repos > iuc > pairtools_parse

diff parse.xml @ 6:26ed6ceeeec1 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 203375a1ff145613df37dae4aba6493708f6ad54
author iuc
date Tue, 09 Apr 2024 10:12:50 +0000
parents 8fae6be7a507
children b0a1f128fa15
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--- a/parse.xml	Fri Apr 05 10:33:52 2024 +0000
+++ b/parse.xml	Tue Apr 09 10:12:50 2024 +0000
@@ -32,8 +32,8 @@
         <param argument="--max-molecule-size" type="integer" min="0" value="750" label="Input the maximal size of a Hi-C molecule" help="The maximal size of a Hi-C molecule; used to rescue single ligations(from molecules with three alignments) and to rescue complex ligations."></param>
         <param argument="--drop-readid" type="boolean" truevalue="--drop-readid" falsevalue="" checked="False" label="Do not add read ids to the output"></param>
         <param argument="--drop-seq" type="boolean" truevalue="--drop-seq" falsevalue="" checked="False" label="remove sequences and PHREDs from the sam fields"></param>
-        <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Do not add sams to the output"></param>
-        <param argument="--drop-sam" type="boolean" truevalue="--drop-sam" falsevalue="" checked="False" label="Generate various statistics of pairs file"></param>    
+        <param argument="--output-stats" type="boolean" truevalue="--output-stats" falsevalue="" checked="False" label="Generate various statistics of pairs file"></param>
+        <param argument="--drop-sam" type="boolean" truevalue="--drop-sam" falsevalue="" checked="False" label="Do not add sams to the output"></param>    
         <param argument="--walks-policy" type="select" label="Walks Policy" help="The policy for reporting unrescuable walks.">
             <expand macro="walks_policy_options"/>
         </param>