Mercurial > repos > iuc > pairtools_parse
changeset 5:a98caf2d8309 draft
planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
| author | iuc |
|---|---|
| date | Fri, 05 Apr 2024 10:33:52 +0000 |
| parents | 4705f16fdd10 |
| children | 26ed6ceeeec1 |
| files | test-data/pairs_output.stats test-data/pairs_output2.stats test-data/pairs_output_merged.stats test-data/pairs_output_with_chromsize.stats test-data/pairs_output_yaml.stats |
| diffstat | 5 files changed, 935 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pairs_output_merged.stats Fri Apr 05 10:33:52 2024 +0000 @@ -0,0 +1,185 @@ +total 1184 +total_unmapped 8 +total_single_sided_mapped 294 +total_mapped 882 +total_dups 0 +total_nodups 882 +cis 882 +trans 0 +pair_types/NU 2 +pair_types/UR 38 +pair_types/MR 12 +pair_types/MU 42 +pair_types/UU 810 +pair_types/RU 34 +pair_types/NR 238 +pair_types/MM 8 +cis_1kb+ 150 +cis_2kb+ 144 +cis_4kb+ 140 +cis_10kb+ 134 +cis_20kb+ 122 +cis_40kb+ 122 +summary/frac_cis_1kb+ 0.17006802721088435 +summary/frac_dups 0.0 +summary/frac_cis_10kb+ 0.15192743764172337 +summary/complexity_naive nan +summary/frac_cis 1.0 +summary/frac_cis_2kb+ 0.16326530612244897 +summary/frac_cis_4kb+ 0.15873015873015872 +summary/frac_cis_20kb+ 0.1383219954648526 +summary/frac_cis_40kb+ 0.1383219954648526 +chrom_freq/Test_seq/Test_seq 882 +dist_freq/0-1/+- 0 +dist_freq/0-1/-+ 0 +dist_freq/0-1/-- 0 +dist_freq/0-1/++ 0 +dist_freq/1-2/+- 0 +dist_freq/1-2/-+ 0 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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pairs_output_with_chromsize.stats Fri Apr 05 10:33:52 2024 +0000 @@ -0,0 +1,185 @@ +total 592 +total_unmapped 4 +total_single_sided_mapped 147 +total_mapped 441 +total_dups 0 +total_nodups 441 +cis 441 +trans 0 +pair_types/UU 405 +pair_types/NR 119 +pair_types/MU 21 +pair_types/UR 19 +pair_types/RU 17 +pair_types/MR 6 +pair_types/MM 4 +pair_types/NU 1 +cis_1kb+ 75 +cis_2kb+ 72 +cis_4kb+ 70 +cis_10kb+ 67 +cis_20kb+ 61 +cis_40kb+ 61 +summary/frac_cis 1.0 +summary/frac_cis_1kb+ 0.17006802721088435 +summary/frac_cis_2kb+ 0.16326530612244897 +summary/frac_cis_4kb+ 0.15873015873015872 +summary/frac_cis_10kb+ 0.15192743764172337 +summary/frac_cis_20kb+ 0.1383219954648526 +summary/frac_cis_40kb+ 0.1383219954648526 +summary/frac_dups 0.0 +summary/complexity_naive nan +chrom_freq/Test_seq/Test_seq 441 +dist_freq/0-1/+- 0 +dist_freq/0-1/-+ 0 +dist_freq/0-1/-- 0 +dist_freq/0-1/++ 0 +dist_freq/1-2/+- 0 +dist_freq/1-2/-+ 0 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+dist_freq/562-1000/-- 0 +dist_freq/562-1000/++ 0 +dist_freq/1000-1778/+- 1 +dist_freq/1000-1778/-+ 0 +dist_freq/1000-1778/-- 1 +dist_freq/1000-1778/++ 0 +dist_freq/1778-3162/+- 1 +dist_freq/1778-3162/-+ 0 +dist_freq/1778-3162/-- 1 +dist_freq/1778-3162/++ 1 +dist_freq/3162-5623/+- 0 +dist_freq/3162-5623/-+ 0 +dist_freq/3162-5623/-- 0 +dist_freq/3162-5623/++ 0 +dist_freq/5623-10000/+- 2 +dist_freq/5623-10000/-+ 0 +dist_freq/5623-10000/-- 0 +dist_freq/5623-10000/++ 1 +dist_freq/10000-17783/+- 2 +dist_freq/10000-17783/-+ 2 +dist_freq/10000-17783/-- 0 +dist_freq/10000-17783/++ 1 +dist_freq/17783-31623/+- 1 +dist_freq/17783-31623/-+ 0 +dist_freq/17783-31623/-- 0 +dist_freq/17783-31623/++ 0 +dist_freq/31623-56234/+- 0 +dist_freq/31623-56234/-+ 1 +dist_freq/31623-56234/-- 21 +dist_freq/31623-56234/++ 10 +dist_freq/56234-100000/+- 3 +dist_freq/56234-100000/-+ 0 +dist_freq/56234-100000/-- 1 +dist_freq/56234-100000/++ 3 +dist_freq/100000-177828/+- 3 +dist_freq/100000-177828/-+ 3 +dist_freq/100000-177828/-- 2 +dist_freq/100000-177828/++ 7 +dist_freq/177828-316228/+- 4 +dist_freq/177828-316228/-+ 0 +dist_freq/177828-316228/-- 0 +dist_freq/177828-316228/++ 2 +dist_freq/316228-562341/+- 0 +dist_freq/316228-562341/-+ 1 +dist_freq/316228-562341/-- 0 +dist_freq/316228-562341/++ 0 +dist_freq/562341-1000000/+- 0 +dist_freq/562341-1000000/-+ 0 +dist_freq/562341-1000000/-- 0 +dist_freq/562341-1000000/++ 0 +dist_freq/1000000-1778279/+- 0 +dist_freq/1000000-1778279/-+ 0 +dist_freq/1000000-1778279/-- 0 +dist_freq/1000000-1778279/++ 0 +dist_freq/1778279-3162278/+- 0 +dist_freq/1778279-3162278/-+ 0 +dist_freq/1778279-3162278/-- 0 +dist_freq/1778279-3162278/++ 0 +dist_freq/3162278-5623413/+- 0 +dist_freq/3162278-5623413/-+ 0 +dist_freq/3162278-5623413/-- 0 +dist_freq/3162278-5623413/++ 0 +dist_freq/5623413-10000000/+- 0 +dist_freq/5623413-10000000/-+ 0 +dist_freq/5623413-10000000/-- 0 +dist_freq/5623413-10000000/++ 0 +dist_freq/10000000-17782794/+- 0 +dist_freq/10000000-17782794/-+ 0 +dist_freq/10000000-17782794/-- 0 +dist_freq/10000000-17782794/++ 0 +dist_freq/17782794-31622777/+- 0 +dist_freq/17782794-31622777/-+ 0 +dist_freq/17782794-31622777/-- 0 +dist_freq/17782794-31622777/++ 0 +dist_freq/31622777-56234133/+- 0 +dist_freq/31622777-56234133/-+ 0 +dist_freq/31622777-56234133/-- 0 +dist_freq/31622777-56234133/++ 0 +dist_freq/56234133-100000000/+- 0 +dist_freq/56234133-100000000/-+ 0 +dist_freq/56234133-100000000/-- 0 +dist_freq/56234133-100000000/++ 0 +dist_freq/100000000-177827941/+- 0 +dist_freq/100000000-177827941/-+ 0 +dist_freq/100000000-177827941/-- 0 +dist_freq/100000000-177827941/++ 0 +dist_freq/177827941-316227766/+- 0 +dist_freq/177827941-316227766/-+ 0 +dist_freq/177827941-316227766/-- 0 +dist_freq/177827941-316227766/++ 0 +dist_freq/316227766-562341325/+- 0 +dist_freq/316227766-562341325/-+ 0 +dist_freq/316227766-562341325/-- 0 +dist_freq/316227766-562341325/++ 0 +dist_freq/562341325-1000000000/+- 0 +dist_freq/562341325-1000000000/-+ 0 +dist_freq/562341325-1000000000/-- 0 +dist_freq/562341325-1000000000/++ 0 +dist_freq/562341325+/+- 0 +dist_freq/562341325+/-+ 0 +dist_freq/562341325+/-- 0 +dist_freq/562341325+/++ 0 +chromsizes/Test_seq 450060
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pairs_output_yaml.stats Fri Apr 05 10:33:52 2024 +0000 @@ -0,0 +1,195 @@ +no_filter: + total: 592 + total_unmapped: 4 + total_single_sided_mapped: 147 + total_mapped: 441 + total_dups: 0 + total_nodups: 441 + cis: 441 + trans: 0 + pair_types: + UU: 405 + NR: 119 + MU: 21 + UR: 19 + RU: 17 + MR: 6 + MM: 4 + NU: 1 + cis_1kb+: 75 + cis_2kb+: 72 + cis_4kb+: 70 + cis_10kb+: 67 + cis_20kb+: 61 + cis_40kb+: 61 + summary: + frac_cis: 1.0 + frac_cis_1kb+: 0.17006802721088435 + frac_cis_2kb+: 0.16326530612244897 + frac_cis_4kb+: 0.15873015873015872 + frac_cis_10kb+: 0.15192743764172337 + frac_cis_20kb+: 0.1383219954648526 + frac_cis_40kb+: 0.1383219954648526 + frac_dups: 0.0 + complexity_naive: .nan + chrom_freq: + Test_seq/Test_seq: 441 + dist_freq: + +-: + 0: 0 + 1: 0 + 2: 0 + 3: 0 + 6: 0 + 10: 0 + 18: 0 + 32: 7 + 56: 9 + 100: 5 + 178: 60 + 316: 284 + 562: 1 + 1000: 1 + 1778: 1 + 3162: 0 + 5623: 2 + 10000: 2 + 17783: 1 + 31623: 0 + 56234: 3 + 100000: 3 + 177828: 4 + 316228: 0 + 562341: 0 + 1000000: 0 + 1778279: 0 + 3162278: 0 + 5623413: 0 + 10000000: 0 + 17782794: 0 + 31622777: 0 + 56234133: 0 + 100000000: 0 + 177827941: 0 + 316227766: 0 + 562341325: 0 + 1000000000: 0 + -+: + 0: 0 + 1: 0 + 2: 0 + 3: 0 + 6: 0 + 10: 0 + 18: 0 + 32: 0 + 56: 0 + 100: 0 + 178: 0 + 316: 0 + 562: 0 + 1000: 0 + 1778: 0 + 3162: 0 + 5623: 0 + 10000: 2 + 17783: 0 + 31623: 1 + 56234: 0 + 100000: 3 + 177828: 0 + 316228: 1 + 562341: 0 + 1000000: 0 + 1778279: 0 + 3162278: 0 + 5623413: 0 + 10000000: 0 + 17782794: 0 + 31622777: 0 + 56234133: 0 + 100000000: 0 + 177827941: 0 + 316227766: 0 + 562341325: 0 + 1000000000: 0 + --: + 0: 0 + 1: 0 + 2: 0 + 3: 0 + 6: 0 + 10: 0 + 18: 0 + 32: 0 + 56: 0 + 100: 0 + 178: 0 + 316: 0 + 562: 0 + 1000: 1 + 1778: 1 + 3162: 0 + 5623: 0 + 10000: 0 + 17783: 0 + 31623: 21 + 56234: 1 + 100000: 2 + 177828: 0 + 316228: 0 + 562341: 0 + 1000000: 0 + 1778279: 0 + 3162278: 0 + 5623413: 0 + 10000000: 0 + 17782794: 0 + 31622777: 0 + 56234133: 0 + 100000000: 0 + 177827941: 0 + 316227766: 0 + 562341325: 0 + 1000000000: 0 + ++: + 0: 0 + 1: 0 + 2: 0 + 3: 0 + 6: 0 + 10: 0 + 18: 0 + 32: 0 + 56: 0 + 100: 0 + 178: 0 + 316: 0 + 562: 0 + 1000: 0 + 1778: 1 + 3162: 0 + 5623: 1 + 10000: 1 + 17783: 0 + 31623: 10 + 56234: 3 + 100000: 7 + 177828: 2 + 316228: 0 + 562341: 0 + 1000000: 0 + 1778279: 0 + 3162278: 0 + 5623413: 0 + 10000000: 0 + 17782794: 0 + 31622777: 0 + 56234133: 0 + 100000000: 0 + 177827941: 0 + 316227766: 0 + 562341325: 0 + 1000000000: 0 + chromsizes: + Test_seq: 450060