Mercurial > repos > iuc > pairtools_sort

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planemo upload for repository https://github.com/open2c/pairtools commit 89826caaf2e2bc933ef2ce407f21260ad69bc5c7
author iuc
date Sun, 22 Dec 2024 15:41:44 +0000
parents 8ed44487c834
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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1 total 592
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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2 total_unmapped 4
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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3 total_single_sided_mapped 147
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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4 total_mapped 441
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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5 total_dups 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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6 total_nodups 441
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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7 cis 441
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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8 trans 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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9 pair_types/UU 405
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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10 pair_types/NR 119
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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11 pair_types/MU 21
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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12 pair_types/UR 19
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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13 pair_types/RU 17
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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14 pair_types/MR 6
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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15 pair_types/MM 4
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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16 pair_types/NU 1
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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17 cis_1kb+ 75
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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18 cis_2kb+ 72
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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19 cis_4kb+ 70
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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20 cis_10kb+ 67
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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21 cis_20kb+ 61
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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22 cis_40kb+ 61
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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23 summary/frac_cis 1.0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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24 summary/frac_cis_1kb+ 0.17006802721088435
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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25 summary/frac_cis_2kb+ 0.16326530612244897
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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26 summary/frac_cis_4kb+ 0.15873015873015872
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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27 summary/frac_cis_10kb+ 0.15192743764172337
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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28 summary/frac_cis_20kb+ 0.1383219954648526
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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29 summary/frac_cis_40kb+ 0.1383219954648526
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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30 summary/frac_dups 0.0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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31 summary/complexity_naive nan
5
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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32 summary/dist_freq_convergence/convergence_dist 421697
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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33 summary/dist_freq_convergence/strands_w_max_convergence_dist ++
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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34 summary/dist_freq_convergence/convergence_rel_diff_threshold 0.05
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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35 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/++ 25
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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36 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-- 26
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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37 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/-+ 7
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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38 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist/+- 383
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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39 summary/dist_freq_convergence/n_cis_pairs_below_convergence_dist_all_strands 441
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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40 summary/dist_freq_convergence/n_cis_pairs_above_convergence_dist_all_strands 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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41 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/++ 0.05668934240362812
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
42 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-- 0.05895691609977324
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
43 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/-+ 0.015873015873015872
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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44 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist/+- 0.8684807256235828
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
45 summary/dist_freq_convergence/frac_cis_in_cis_below_convergence_dist_all_strands 1.0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
46 summary/dist_freq_convergence/frac_cis_in_cis_above_convergence_dist_all_strands 0.0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
47 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/++ 0.05668934240362812
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
48 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-- 0.05895691609977324
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
49 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/-+ 0.015873015873015872
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
50 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist/+- 0.8684807256235828
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
51 summary/dist_freq_convergence/frac_total_mapped_in_cis_below_convergence_dist_all_strands 1.0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
52 summary/dist_freq_convergence/frac_total_mapped_in_cis_above_convergence_dist_all_strands 0.0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
53 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/++ 0.05668934240362812
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
54 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-- 0.05895691609977324
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
55 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/-+ 0.015873015873015872
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
56 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist/+- 0.8684807256235828
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
diff changeset
57 summary/dist_freq_convergence/frac_total_nodups_in_cis_below_convergence_dist_all_strands 1.0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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58 summary/dist_freq_convergence/frac_total_nodups_in_cis_above_convergence_dist_all_strands 0.0
3
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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59 chrom_freq/Test_seq/Test_seq 441
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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60 dist_freq/0-1/+- 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
iuc
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61 dist_freq/0-1/-+ 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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62 dist_freq/0-1/-- 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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63 dist_freq/0-1/++ 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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64 dist_freq/1-2/+- 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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65 dist_freq/1-2/-+ 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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66 dist_freq/1-2/-- 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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67 dist_freq/1-2/++ 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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68 dist_freq/2-3/+- 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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69 dist_freq/2-3/-+ 0
d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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70 dist_freq/2-3/-- 0
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71 dist_freq/2-3/++ 0
5
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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72 dist_freq/3-4/+- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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73 dist_freq/3-4/-+ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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74 dist_freq/3-4/-- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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parents: 3
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75 dist_freq/3-4/++ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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76 dist_freq/4-6/+- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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77 dist_freq/4-6/-+ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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78 dist_freq/4-6/-- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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79 dist_freq/4-6/++ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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80 dist_freq/6-7/+- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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81 dist_freq/6-7/-+ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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82 dist_freq/6-7/-- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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83 dist_freq/6-7/++ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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84 dist_freq/7-10/+- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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85 dist_freq/7-10/-+ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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parents: 3
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86 dist_freq/7-10/-- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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87 dist_freq/7-10/++ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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diff changeset
88 dist_freq/10-13/+- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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89 dist_freq/10-13/-+ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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90 dist_freq/10-13/-- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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91 dist_freq/10-13/++ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
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92 dist_freq/13-18/+- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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93 dist_freq/13-18/-+ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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94 dist_freq/13-18/-- 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
iuc
parents: 3
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95 dist_freq/13-18/++ 0
8ed44487c834 planemo upload for repository https://github.com/open2c/pairtools commit 162c595b19e442f40be4c2f5434b20b56ade52d4
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302 dist_freq/42169650-56234133/-- 0
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312 dist_freq/100000000-133352143/+- 0
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329 dist_freq/316227766-421696503/-+ 0
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332 dist_freq/421696503-562341325/+- 0
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333 dist_freq/421696503-562341325/-+ 0
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334 dist_freq/421696503-562341325/-- 0
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337 dist_freq/562341325-749894209/-+ 0
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339 dist_freq/562341325-749894209/++ 0
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340 dist_freq/749894209-1000000000/+- 0
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341 dist_freq/749894209-1000000000/-+ 0
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342 dist_freq/749894209-1000000000/-- 0
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343 dist_freq/749894209-1000000000/++ 0
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344 dist_freq/1000000000+/+- 0
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345 dist_freq/1000000000+/-+ 0
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346 dist_freq/1000000000+/-- 0
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347 dist_freq/1000000000+/++ 0
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d392cfd963f4 planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
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348 chromsizes/Test_seq 450060