Mercurial > repos > iuc > pairtools_stats

diff test-data/output_parsed_pairs_bam_readid_dropped_seq.pairs @ 3:c20a07c9237b draft

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planemo upload for repository https://github.com/open2c/pairtools commit 13aa776596c927adff29d936740ac80f0e37375d
author iuc
date Tue, 21 May 2024 16:04:10 +0000
parents 6cbca5661205
children
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--- a/test-data/output_parsed_pairs_bam_readid_dropped_seq.pairs	Tue Apr 30 12:02:01 2024 +0000
+++ b/test-data/output_parsed_pairs_bam_readid_dropped_seq.pairs	Tue May 21 16:04:10 2024 +0000
@@ -4,7 +4,7 @@
 #chromsize: Test_seq 450060
 #samheader: @SQ	SN:Test_seq	LN:450060
 #samheader: @PG	ID:bwa-mem2	PN:bwa-mem2	VN:2.2.1	CL:bwa-mem2 mem -5SP -T0 -t 8 test test_hic_reads_1.fq test_hic_reads_2.fq
-#samheader: @PG	ID:pairtools_parse	PN:pairtools_parse	CL:/usr/local/bin/pairtools parse /tmp/tmpchj83off/files/b/7/b/dataset_b7b0c820-0d14-4f18-95e3-c6fb58aae265.dat -c /tmp/tmpchj83off/files/d/7/1/dataset_d718e69b-ffe9-4c9d-ab83-1d209e3a56bf.dat -o /tmp/tmpchj83off/job_working_directory/000/22/outputs/dataset_e94790d6-3c0a-4eaf-a7ee-9cab4494c297.dat --min-mapq 40 --max-molecule-size 750 --drop-seq --walks-policy 5unique --max-inter-align-gap 20 --nproc-in 1 --nproc-out 1	PP:bwa-mem2	VN:1.1.0
+#samheader: @PG	ID:pairtools_parse	PN:pairtools_parse	CL:/usr/local/bin/pairtools parse /tmp/tmprvti6kw7/files/3/d/f/dataset_3df76cd6-dab5-462b-a22f-bf1115b9974c.dat -c /tmp/tmprvti6kw7/files/c/b/d/dataset_cbd66733-f4da-4e5d-b5c8-7d6950d3a01f.dat -o /tmp/tmprvti6kw7/job_working_directory/000/22/outputs/dataset_418bdbde-f199-4661-b278-dd05e7cdc375.dat --min-mapq 40 --max-molecule-size 750 --drop-seq --walks-policy 5unique --max-inter-align-gap 20 --nproc-in 1 --nproc-out 1	PP:bwa-mem2	VN:1.1.0
 #columns: readID chrom1 pos1 chrom2 pos2 strand1 strand2 pair_type sam1 sam2
 A00126:224:H7HMWDSX3:3:1101:4779:3098	!	0	Test_seq	166211	-	-	MU	A00126:224:H7HMWDSX3:3:1101:4779:3098177Test_seq214824578M=166134-48691**NM:i:3MD:Z:1T33G33A8MC:Z:78MAS:i:66XS:i:63XA:Z:Test_seq,+166134,78M,3;Yt:Z:MU	A00126:224:H7HMWDSX3:3:1101:4779:3098113Test_seq1661344378M=21482448691**NM:i:0MD:Z:78MC:Z:78MAS:i:78XS:i:63XA:Z:Test_seq,+214829,5S73M,2;Yt:Z:MU
 A00126:224:H7HMWDSX3:3:1101:2908:3239	!	0	Test_seq	167696	-	-	MU	A00126:224:H7HMWDSX3:3:1101:2908:3239161Test_seq16733123151M=167546366**NM:i:1MD:Z:37A113MC:Z:151MAS:i:146XS:i:135XA:Z:Test_seq,-213553,151M,4;Yt:Z:MU	A00126:224:H7HMWDSX3:3:1101:2908:323981Test_seq16754644151M=167331-366**NM:i:3MD:Z:82G15T30C21MC:Z:151MAS:i:136XS:i:114XA:Z:Test_seq,+213342,118M2I23M2I6M,8;Yt:Z:MU