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view test-data/pairs_output_yaml.stats @ 0:3c87fa1a3b50 draft

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planemo upload for repository https://github.com/open2c/pairtools commit 01e7e0814f8bb4253a92ee4541b555e9af74fb0a
author iuc
date Fri, 05 Apr 2024 10:33:05 +0000
parents
children 6cbca5661205
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no_filter:
  total: 592
  total_unmapped: 4
  total_single_sided_mapped: 147
  total_mapped: 441
  total_dups: 0
  total_nodups: 441
  cis: 441
  trans: 0
  pair_types:
    UU: 405
    NR: 119
    MU: 21
    UR: 19
    RU: 17
    MR: 6
    MM: 4
    NU: 1
  cis_1kb+: 75
  cis_2kb+: 72
  cis_4kb+: 70
  cis_10kb+: 67
  cis_20kb+: 61
  cis_40kb+: 61
  summary:
    frac_cis: 1.0
    frac_cis_1kb+: 0.17006802721088435
    frac_cis_2kb+: 0.16326530612244897
    frac_cis_4kb+: 0.15873015873015872
    frac_cis_10kb+: 0.15192743764172337
    frac_cis_20kb+: 0.1383219954648526
    frac_cis_40kb+: 0.1383219954648526
    frac_dups: 0.0
    complexity_naive: .nan
  chrom_freq:
    Test_seq/Test_seq: 441
  dist_freq:
    +-:
      0: 0
      1: 0
      2: 0
      3: 0
      6: 0
      10: 0
      18: 0
      32: 7
      56: 9
      100: 5
      178: 60
      316: 284
      562: 1
      1000: 1
      1778: 1
      3162: 0
      5623: 2
      10000: 2
      17783: 1
      31623: 0
      56234: 3
      100000: 3
      177828: 4
      316228: 0
      562341: 0
      1000000: 0
      1778279: 0
      3162278: 0
      5623413: 0
      10000000: 0
      17782794: 0
      31622777: 0
      56234133: 0
      100000000: 0
      177827941: 0
      316227766: 0
      562341325: 0
      1000000000: 0
    -+:
      0: 0
      1: 0
      2: 0
      3: 0
      6: 0
      10: 0
      18: 0
      32: 0
      56: 0
      100: 0
      178: 0
      316: 0
      562: 0
      1000: 0
      1778: 0
      3162: 0
      5623: 0
      10000: 2
      17783: 0
      31623: 1
      56234: 0
      100000: 3
      177828: 0
      316228: 1
      562341: 0
      1000000: 0
      1778279: 0
      3162278: 0
      5623413: 0
      10000000: 0
      17782794: 0
      31622777: 0
      56234133: 0
      100000000: 0
      177827941: 0
      316227766: 0
      562341325: 0
      1000000000: 0
    --:
      0: 0
      1: 0
      2: 0
      3: 0
      6: 0
      10: 0
      18: 0
      32: 0
      56: 0
      100: 0
      178: 0
      316: 0
      562: 0
      1000: 1
      1778: 1
      3162: 0
      5623: 0
      10000: 0
      17783: 0
      31623: 21
      56234: 1
      100000: 2
      177828: 0
      316228: 0
      562341: 0
      1000000: 0
      1778279: 0
      3162278: 0
      5623413: 0
      10000000: 0
      17782794: 0
      31622777: 0
      56234133: 0
      100000000: 0
      177827941: 0
      316227766: 0
      562341325: 0
      1000000000: 0
    ++:
      0: 0
      1: 0
      2: 0
      3: 0
      6: 0
      10: 0
      18: 0
      32: 0
      56: 0
      100: 0
      178: 0
      316: 0
      562: 0
      1000: 0
      1778: 1
      3162: 0
      5623: 1
      10000: 1
      17783: 0
      31623: 10
      56234: 3
      100000: 7
      177828: 2
      316228: 0
      562341: 0
      1000000: 0
      1778279: 0
      3162278: 0
      5623413: 0
      10000000: 0
      17782794: 0
      31622777: 0
      56234133: 0
      100000000: 0
      177827941: 0
      316227766: 0
      562341325: 0
      1000000000: 0
  chromsizes:
    Test_seq: 450060