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comparison pangolin.xml @ 13:debfccc4d65b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 9e0b7f8095ca73b65255df51444cf0b7e14fff67"
author iuc
date Mon, 01 Nov 2021 11:31:16 +0000
parents 073de3fb84a0
children 83a69484cb87
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12:b7e297c2ede6 13:debfccc4d65b
1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy1" profile="20.01"> 1 <tool id="pangolin" name="Pangolin" version="@TOOL_VERSION@+galaxy0" profile="20.01">
2 <description>Phylogenetic Assignment of Outbreak Lineages</description> 2 <description>Phylogenetic Assignment of Outbreak Lineages</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">3.1.14</token> 4 <token name="@TOOL_VERSION@">3.1.16</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">pangolin</requirement>
8 <!-- the scorpio requirement is because pangolin got an update to use scorpio 0.3.13 (to detect AY.4.2 better)
9 while still using the pangolin 3.1.14 code. when pangolin gets updated past 3.1.14 this requirement can
10 be removed -->
11 <requirement type="package" version="0.3.13">scorpio</requirement>
12 <requirement type="package" version="0.23.0">csvtk</requirement> 8 <requirement type="package" version="0.23.0">csvtk</requirement>
13 </requirements> 9 </requirements>
14 <command detect_errors="exit_code"><![CDATA[ 10 <command detect_errors="exit_code"><![CDATA[
15 #if str($db.source) == "download" 11 #if str($db.source) == "download"
16 pangolin --update-data --datadir datadir && 12 pangolin --update-data --datadir datadir &&