Mercurial > repos > iuc > pangolin
comparison fetch_latest_pangolearn.py @ 1:f557122d379e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pangolin commit 1522bdb834ffab157d1ca25e6e74db21f62e3aae"
| author | iuc |
|---|---|
| date | Sun, 25 Apr 2021 20:17:07 +0000 |
| parents | |
| children | 437e28791761 |
comparison
equal
deleted
inserted
replaced
| 0:0ec813ad2910 | 1:f557122d379e |
|---|---|
| 1 #!/usr/bin/env python | |
| 2 | |
| 3 import json | |
| 4 import os | |
| 5 import tarfile | |
| 6 | |
| 7 # rely on the fact that pangolin itself uses the requests module | |
| 8 import requests | |
| 9 | |
| 10 response = requests.get( | |
| 11 "https://api.github.com/repos/cov-lineages/pangoLEARN/releases/latest" | |
| 12 ) | |
| 13 if response.status_code == 200: | |
| 14 details = json.loads(response.text) | |
| 15 response = requests.get(details["tarball_url"]) | |
| 16 if response.status_code == 200: | |
| 17 with open("pangolearn.tgz", "wb") as handle: | |
| 18 handle.write(response.content) | |
| 19 tf = tarfile.open("pangolearn.tgz") | |
| 20 pl_path = tf.next().name | |
| 21 tf.extractall() | |
| 22 tf.close() | |
| 23 os.rename(os.path.join(pl_path, "pangoLEARN"), "datadir") | |
| 24 else: | |
| 25 response.raise_for_status() | |
| 26 else: | |
| 27 response.raise_for_status() |