# HG changeset patch
# User iuc
# Date 1761148046 0
# Node ID 12400971c4a4f0cefb3e8abc8fe22ab2ed7f91bb
# Parent  08cc820b5df7ac94d755b6515422f352154a7c6f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/panta commit 6adea21f21f7445e92568579096b7c7ea4781e50

diff -r 08cc820b5df7 -r 12400971c4a4 macros.xml
--- a/macros.xml	Mon Oct 13 07:59:33 2025 +0000
+++ b/macros.xml	Wed Oct 22 15:47:26 2025 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.0.1</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">25.0</token>
     <xml name="requirements">
         <requirements>
diff -r 08cc820b5df7 -r 12400971c4a4 panta.xml
--- a/panta.xml	Mon Oct 13 07:59:33 2025 +0000
+++ b/panta.xml	Wed Oct 22 15:47:26 2025 +0000
@@ -127,10 +127,10 @@
         <data format="txt" name="summary_statistics" label="${tool.name} on ${on_string} : Summary Statistics" from_work_dir="out/summary_statistics.txt"/>
         
         <!--Alignment outputs -->
-        <data format="txt" name="core_gene_alignment" label="${tool.name} on ${on_string} : Core Gene Alignment" from_work_dir="out/core_gene_alignment.aln.gz">
+        <data format="fasta" name="core_gene_alignment" label="${tool.name} on ${on_string} : Core Gene Alignment" from_work_dir="out/core_gene_alignment.aln.gz">
             <filter> ['alignment'] != 'None' </filter>
         </data>
-        <data format="txt" name="pan_genome_reference" label="${tool.name} on ${on_string} : Pan Genome Reference" from_work_dir="out/pan_genome_reference.fna">
+        <data format="fasta" name="pan_genome_reference" label="${tool.name} on ${on_string} : Pan Genome Reference" from_work_dir="out/pan_genome_reference.fna">
             <filter> ['alignment'] != 'None' </filter>
         </data>
     </outputs>
@@ -400,12 +400,12 @@
                     <has_n_lines n="6" delta='3'/>
                 </assert_contents>
             </output>
-            <output name="core_gene_alignment" ftype="txt">
+            <output name="core_gene_alignment" ftype="fasta">
                 <assert_contents>
                     <has_n_lines n="96130" delta='3'/>
                 </assert_contents>
             </output>
-            <output name="pan_genome_reference" ftype="txt">
+            <output name="pan_genome_reference" ftype="fasta">
                 <assert_contents>
                     <has_text text="AAAGGCGTTTGGTATATAACGATGCCAG"/>
                     <has_n_lines n="84292" delta='3'/>