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comparison phyloseq_from_dada2.xml @ 1:b85ba18a8f36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyloseq commit 7df921baa7aa8680421b9440a1cd6eaab1a15ce2
author iuc
date Fri, 09 Feb 2024 21:42:24 +0000
parents 46a99bd1f10e
children 87064cb77a52
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0:46a99bd1f10e 1:b85ba18a8f36
1 <tool id="phyloseq_from_dada2" name="Create phyloseq object" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="phyloseq_from_dada2" name="Create phyloseq object" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>from dada2 sequence and taxonomy tables</description> 2 <description>from dada2 sequence and taxonomy tables</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
6 <expand macro="requirements"/> 7 <expand macro="requirements"/>
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 Rscript '${__tool_directory__}/phyloseq_from_dada2.R' 9 Rscript '${__tool_directory__}/phyloseq_from_dada2.R'
9 --sequence_table '$sequence_table' 10 --sequence_table '$sequence_table'
10 --taxonomy_table '$taxonomy_table' 11 --taxonomy_table '$taxonomy_table'