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comparison test-data/rich_dense_otu_table.biom @ 2:fb7c4bbe8994 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyloseq commit 5ec9f9e81bb9a42dec5c331dd23215ca0b027b2b
author iuc
date Sat, 16 Mar 2024 07:55:57 +0000
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1:1ff178d1757e 2:fb7c4bbe8994
1 {
2 "id":null,
3 "format": "Biological Observation Matrix 1.0.0-dev",
4 "format_url": "http://biom-format.org",
5 "type": "OTU table",
6 "generated_by": "QIIME revision XYZ",
7 "date": "2011-12-19T19:00:00",
8 "rows":[
9 {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}},
10 {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}},
11 {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}},
12 {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}},
13 {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}
14 ],
15 "columns":[
16 {"id":"Sample1", "metadata":{
17 "BarcodeSequence":"CGCTTATCGAGA",
18 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
19 "BODY_SITE":"gut",
20 "Description":"human gut"}},
21 {"id":"Sample2", "metadata":{
22 "BarcodeSequence":"CATACCAGTAGC",
23 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
24 "BODY_SITE":"gut",
25 "Description":"human gut"}},
26 {"id":"Sample3", "metadata":{
27 "BarcodeSequence":"CTCTCTACCTGT",
28 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
29 "BODY_SITE":"gut",
30 "Description":"human gut"}},
31 {"id":"Sample4", "metadata":{
32 "BarcodeSequence":"CTCTCGGCCTGT",
33 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
34 "BODY_SITE":"skin",
35 "Description":"human skin"}},
36 {"id":"Sample5", "metadata":{
37 "BarcodeSequence":"CTCTCTACCAAT",
38 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
39 "BODY_SITE":"skin",
40 "Description":"human skin"}},
41 {"id":"Sample6", "metadata":{
42 "BarcodeSequence":"CTAACTACCAAT",
43 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT",
44 "BODY_SITE":"skin",
45 "Description":"human skin"}}
46 ],
47 "matrix_type": "dense",
48 "matrix_element_type": "int",
49 "shape": [5,6],
50 "data": [[0,0,1,0,0,0],
51 [5,1,0,2,3,1],
52 [0,0,1,4,2,0],
53 [2,1,1,0,0,1],
54 [0,1,1,0,0,0]]
55 }
56