Mercurial > repos > iuc > phyml
diff test-data/phylip_phyml_stats.txt @ 3:7157a5b34a68 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/phyml commit fd76965826549db42ae414b80e4254089babe6a5
| author | iuc |
|---|---|
| date | Mon, 23 Oct 2023 17:15:37 +0000 |
| parents | 2bf47d57ebb5 |
| children |
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--- a/test-data/phylip_phyml_stats.txt Mon Jun 22 18:37:56 2020 -0400 +++ b/test-data/phylip_phyml_stats.txt Mon Oct 23 17:15:37 2023 +0000 @@ -1,6 +1,6 @@ oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo - --- PhyML 3.3.20190909 --- + --- PhyML 3.3.20220408 --- http://www.atgc-montpellier.fr/phyml Copyright CNRS - Universite Montpellier oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo @@ -12,17 +12,17 @@ . Number of taxa: 7 . Log-likelihood: -3113.71269 . Unconstrained log-likelihood: -3015.37711 -. Composite log-likelihood: -14534.82403 +. Composite log-likelihood: -14534.82407 . Parsimony: 177 . Tree size: 0.12462 . Discrete gamma model: Yes - Number of classes: 4 - Gamma shape parameter: 0.774 - - Relative rate in class 1: 0.08994 [freq=0.250000] - - Relative rate in class 2: 0.39631 [freq=0.250000] - - Relative rate in class 3: 0.94938 [freq=0.250000] - - Relative rate in class 4: 2.56437 [freq=0.250000] -. Transition/transversion ratio: 2.937995 + - Relative rate in class 1: 0.08995 [freq=0.250000] + - Relative rate in class 2: 0.39633 [freq=0.250000] + - Relative rate in class 3: 0.94939 [freq=0.250000] + - Relative rate in class 4: 2.56433 [freq=0.250000] +. Transition/transversion ratio: 2.937853 . Nucleotides frequencies: - f(A)= 0.28368 - f(C)= 0.21846 @@ -32,7 +32,7 @@ . Run ID: none . Random seed: 1458308600 . Subtree patterns aliasing: no -. Version: 3.3.20190909 +. Version: 3.3.20220408 . Time used: 0h0m0s (0 seconds) oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo