Mercurial > repos > iuc > pizzly
comparison tool-data/all_fasta.loc.sample @ 0:f7556cfa4047 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pizzly/ commit a9f602d697c570bc40c6b6ab8e873a11e0eb703d
| author | iuc |
|---|---|
| date | Wed, 13 Sep 2017 22:40:57 -0400 |
| parents | |
| children | 91ef4a171202 |
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| -1:000000000000 | 0:f7556cfa4047 |
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| 1 #This file lists the locations and dbkeys of all the fasta files | |
| 2 #under the "genome" directory (a directory that contains a directory | |
| 3 #for each build). The script extract_fasta.py will generate the file | |
| 4 #all_fasta.loc. This file has the format (white space characters are | |
| 5 #TAB characters): | |
| 6 # | |
| 7 #<unique_build_id> <dbkey> <display_name> <file_path> | |
| 8 # | |
| 9 #So, all_fasta.loc could look something like this: | |
| 10 # | |
| 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | |
| 12 #hg38canon hg38 Human (Homo sapiens): hg38 Canonical /path/to/genome/hg38/hg38canon.fa | |
| 13 #hg38full hg38 Human (Homo sapiens): hg38 Full /path/to/genome/hg38/hg38full.fa | |
| 14 # | |
| 15 #Your all_fasta.loc file should contain an entry for each individual | |
| 16 #fasta file. So there will be multiple fasta files for each build, | |
| 17 #such as with hg38 above. | |
| 18 # |