Mercurial > repos > iuc > plasmidfinder
diff test-data/test_3/Plasmid_seqs_test3.fsa @ 0:2b6e795b22a9 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
author | iuc |
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date | Mon, 19 Sep 2022 08:47:42 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_3/Plasmid_seqs_test3.fsa Mon Sep 19 08:47:42 2022 +0000 @@ -0,0 +1,59 @@ +>contig00014 len=836 cov=2.5 corr=0 origname=NODE_172_length_836_cov_2.489422_pilon sw=shovill-spades/1.1.0 date=20220302:2..836:rep2_2_repR(pEF1)_DQ198088:55.890228 +atgttgagcgaaatttattcagctattcttaaaaacggcttacgtacatacaaatatcga +aacagcaccatgaaacctgcaggtcatattgattccagtaggagtggtgctatctttgcg +taccttagcaagcaattaatgaatgttgggcgtggtatggtcattacttcggaagaagct +attttagagaacgaaaagaaactaacgcattggacacctaatacctatcgctttggtact +tatgcggatgattatcgaacagtggttaaaggtcattctgagaaaaacttaagtcaaatc +aacacatttgtagttgatatcgattcaaaagagaaccatcaaggcgaaattattttagcc +tgtttagatcaagtGGGCTACATGCCAACGCTAATTTTAGAATCAGATCATGGTTATCAA +GTTTATTTTGTACTAAAGACACCAGGCTATGTCACAAAGAAAAGCAATTTCAAGGTGATC +GATGTAGCAAAAAAAATTTCAAAAACAATTCGTCTACAGTTGGCTGAAAAATTGTCCGGA +GTGGATCTAGGATGTAACCACTTCGGAATTGCTCGATTCCCACAAGAAAATAATATTGTT +TTTAAAGAAATGAACTATCAGTATTCTTTTGCTGACTGGATTCAATGGTCGATGAAGCTT +GAATCAGATCAAAAAACAAAAGAAGATCGAGAACGAAAACTAATTGTCTTTCCTGAGAAA +AAAGAAATTCGTCAAGTAGATGAACCGTGGTTCGATATGTTACTTCATAAAGCAAACATC +GTCGGCGGAGAAGGACGTCTTGGTCGAAATAATGTGATTTTCACGCTTTCTTTAGCTTAT +TACTCTTCAGGTTATGCATTGGATACTTGCGAATACAATATGTTCACATTCAACGAACGG +TTACAGGAACCGCTATCTGAAGCAGAATTAGTAAAGATTGTACGTAGTGCTTATTCTGGT +AATTATCAAGCAGCAAGCAGAGAATTCATTATTGAATTGTGCCAGCAATGGGTTTCACCA +ACCTTAAAAAATAATGATCTGTTCATTCAACGACGTGGCTGGTGGAAATTTAAAAAGCCA +CGAGATCAAAGAAAATATAGTCATAAAAATGAATGGAAAGAAGATCTATTGGCTTATCTA +AGCGAAAAAAGTCTTGCTAGTGAGCCTTATTTGAACCTGTCAAAAAAAGAATTGGCTTCA +CAACTAACGatgcccaagcgaacacttgataagatcttaaatgagttacgagaggagaat +aaagtcttctacaaggtaacacgaggaagaaatggcggaatgatcattgcttcagtcaaa +acgttgttcgcgagagttattcaactaagtaaagaaaagagactagattattcaacaagg +atcacagaggtatttggactcaacgagagcttagtagaagagacatttagacaattatca +acccccttgaaccctcttaaagaagtgaatctttttgaagtagatacaggttga +>contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180 +ATGGCTAATGAGATTGTAAAATACCACCATGAATTAAATACAATTCCTTTAAGAAAATTT +ACACCGGTTGAAATGAATTTGTTTTTTTCCATCGTGTCTAGAATGCGTGAAAAAGGGGAT +AAGACAGTTCGTTTTACGTTTGACCAACTAAAAGATTTAAGTAACTACAAAGCAACTGCA +AATGTACGATTTGTAGAAGATTTAAAAGCAACTTATGAAAAAATCTTATCTTTACGCTTT +GGTCGTAGAAGTGAGTCTGGGCTTTCTTACGATATGTTTGTAATGTTTACAGAATTTAAA +ATCAACGGGGACGTAGAAAATCCTTACGTAGATATACGAATTTACGAAAAAGCACTGCCT +TTGTTAAATAATTTAGACGAGTGGGTACGCTATTCTTTACAACAATTCAACGAGCTACAA +AGTGGCTATGCAAAGACTATGTTTCGTCTGTTAAAGCAATACAGAACCAAAGGTTTCGCA +TATTTCTCCAAAGAAGACTTTCTTGAATTATTAGATATTCCTAAAAGTTATAAGCAACCT +GATATAGATAAACGAGTTATAAAACCTATACGTCAAGAACTAACTGCAATCTTCAAAGGA +CTAACAATCAAAAAGAAATACGGAAAAGGACGGGGAAAACCTGTTATTGGCTATCAATTT +ACGTTCAAACCTGAGATCAAAAAAGCAGACGACTTTAACAAACATGCACCAACCAAAGAA +GACCAAAATAAAGCATTGGCTTTAGCTGATAAACAAAAAGAATACGAAGAACCCGCTACA +ACAATTAACGAAAAAATCAAACAGAAGAAACGAGAACTTGAACTCCTCCAACAAATCAAA +CAACTAGAAAAAGAGAAAAAAGCTCTTGAAAAACAAACAGAGTCCGCACTTTCGGAAAAA +GAGAAAAAAAGTTTATTATCTGATTTAGATAATTTATTCCAGTAG +>contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488 +GTGCGACTGTACAACAAAAAGCTAGAGCAGGAACGAAAAAAAGTAATCGTGCCAAAAGAA +ATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGCAT +GCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCCGATTGATATA +AAACCTATTGATAAAATAGTTATTGAAGGTTTGATAGCTGAGCCTTCTAATTGGTCGATA +ATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAAATGAT +GAGTTAACGAACCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAAAAGAA +TTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA +>contig00009 len=2060 cov=9.4 corr=0 origname=NODE_14_length_2060_cov_9.400414_pilon sw=shovill-spades/1.1.0 date=20220302:1478..1872:rep14a_2_ORF1(pKQ10)_EFU01917:76.156716 +gtgcgacTGTACAACAAAAAGCTAGAGCA-G-GAACGAAAAAAAGTAATCGTGCCAAAAG +AAATCGATACGTGGTGGCGGTTAGAAATGCAGCTAAGACGTGGCAAAGCAACGGATTGGC +ATGCGATGGTTCAGGAAAGCTTAGATAGTTTTGCAAGCCCGCATTTTTTGCC-GATTGAT +ATAAAACCTATTGATAAAATAGTTATTGAAGGTTTGATAGCT-GAGCCTTCTAATTGGTC +G-ATAATTGCTAGACATACAAAATATAAATATCGGAATTTGCTGAAGCAAGAAAGTCAAA +ATGATGAGTTAACGAACCATTTACGAGAGACTTTTAAGGAATCTGCAGACGAATTAAAAA +AAGAATTGGATACGTGGCTTTTGGGGTTGGATGTGACAGAGAAGTGA