Mercurial > repos > iuc > plasmidfinder

diff plasmidfinder.xml @ 3:7075b7a5441b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/plasmidfinder commit 464661a59ed12a642d365f485a222764b55048a5
author iuc
date Thu, 02 Mar 2023 14:58:17 +0000
parents eccc7495c3d9
children
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line diff
--- a/plasmidfinder.xml	Fri Oct 14 22:06:51 2022 +0000
+++ b/plasmidfinder.xml	Thu Mar 02 14:58:17 2023 +0000
@@ -33,7 +33,7 @@
         <section name="input" title="Input parameters" expanded="true">
             <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Choose a fasta or fastq file" help="File to be analyzed"/>
             <param name="database_name" type="select" label="PlasmidFinder database">
-                <options from_data_table="plasmidfinder_db">
+                <options from_data_table="plasmidfinder_database">
                     <validator message="No PlasmidFinder database is available" type="no_options"/>
                 </options>
             </param>
@@ -79,7 +79,7 @@
               <section name="input">
                   <param name="input_file" value="contigs.fasta"/>
                   <param name="input_type" value="genome"/>
-                  <param name="database_name" value="test-plasmindfinder-db"/>
+                  <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/>
               </section>
               <section name="output_files">
                   <param name="output_selection" value="data_json,hit_fasta,plasmid_fasta,result_tsv,result_txt,logfile"/>
@@ -96,7 +96,7 @@
               <section name="input">
                   <param name="input_file" value="data.fastq.gz"/>
                   <param name="input_type" value="raw"/>
-                  <param name="database_name" value="test-plasmindfinder-db"/>
+                  <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/>
               </section>
               <section name="output_files">
                   <param name="output_selection" value="data_json,result_tsv,result_txt,logfile"/>
@@ -111,7 +111,7 @@
               <section name="input">
                   <param name="input_file" value="contigs.fasta"/>
                   <param name="input_type" value="genome"/>
-                  <param name="database_name" value="test-plasmindfinder-db"/>
+                  <param name="database_name" value="plasmidfinder_9002e7282dd0_2022-12-20"/>
               </section>
               <section name="options">
                   <param name="min_cov" value="0.2" />