Mercurial > repos > iuc > plasmidfinder
view test-data/test_1/data_test1.json @ 0:2b6e795b22a9 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
| author | iuc |
|---|---|
| date | Mon, 19 Sep 2022 08:47:42 +0000 |
| parents | |
| children |
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{"plasmidfinder": {"user_input": {"filename(s)": ["/tmp/tmpj3aqa6lu/files/9/6/4/dataset_9649367d-27ab-42b3-8f51-56f81f942d9c.dat"], "method": "blast", "file_format": "fasta"}, "run_info": {"date": "09.09.2022", "time": "08:52:55"}, "results": {"Gram Positive": {"Inc18": "No hit found", "Rep3": {"contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180": {"plasmid": "rep11a", "identity": 99.89, "HSP_length": 945, "template_length": 945, "position_in_ref": "1..945", "contig_name": "contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302", "positions_in_contig": "308..1252", "note": "repA(pB82)", "accession": "AB178871", "coverage": 100.0, "hit_id": "contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180"}}, "Rep_trans": {"contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488": {"plasmid": "rep14a", "identity": 99.5, "HSP_length": 402, "template_length": 402, "position_in_ref": "1..402", "contig_name": "contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302", "positions_in_contig": "1703..2104", "note": "ORF1(pKQ10)", "accession": "EFU01917", "coverage": 100.0, "hit_id": "contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488"}}}}}}