Mercurial > repos > iuc > plasmidfinder
view test-data/test_1/logfile_test1.log @ 0:2b6e795b22a9 draft
planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/plasmidfinder commit 32b1446d0da698b945d7f8b5df6d251b9989d3b1
| author | iuc |
|---|---|
| date | Mon, 19 Sep 2022 08:47:42 +0000 |
| parents | |
| children |
line wrap: on
line source
Found: rep2_2_repR(pEF1)_DQ198088 Saving: contig00014 len=836 cov=2.5 corr=0 origname=NODE_172_length_836_cov_2.489422_pilon sw=shovill-spades/1.1.0 date=20220302:2..836:rep2_2_repR(pEF1)_DQ198088:55.890228 Found: rep11a_1_repA(pB82)_AB178871 Saving: contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180 Found: rep14a_2_ORF1(pKQ10)_EFU01917 Saving: contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488 {'plasmidfinder': {'results': {'Gram Positive': {'Inc18': 'No hit found', 'Rep3': {'contig00003 len=3227 cov=2.2 corr=0 origname=NODE_3_length_3227_cov_2.232903_pilon sw=shovill-spades/1.1.0 date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180': {'HSP_length': 945, 'accession': 'AB178871', 'contig_name': 'contig00003 ' 'len=3227 ' 'cov=2.2 ' 'corr=0 ' 'origname=NODE_3_length_3227_cov_2.232903_pilon ' 'sw=shovill-spades/1.1.0 ' 'date=20220302', 'coverage': 100.0, 'hit_id': 'contig00003 ' 'len=3227 ' 'cov=2.2 ' 'corr=0 ' 'origname=NODE_3_length_3227_cov_2.232903_pilon ' 'sw=shovill-spades/1.1.0 ' 'date=20220302:308..1252:rep11a_1_repA(pB82)_AB178871:99.894180', 'identity': 99.89, 'note': 'repA(pB82)', 'plasmid': 'rep11a', 'position_in_ref': '1..945', 'positions_in_contig': '308..1252', 'template_length': 945}}, 'Rep_trans': {'contig00008 len=2292 cov=2.6 corr=0 origname=NODE_11_length_2292_cov_2.631409_pilon sw=shovill-spades/1.1.0 date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488': {'HSP_length': 402, 'accession': 'EFU01917', 'contig_name': 'contig00008 ' 'len=2292 ' 'cov=2.6 ' 'corr=0 ' 'origname=NODE_11_length_2292_cov_2.631409_pilon ' 'sw=shovill-spades/1.1.0 ' 'date=20220302', 'coverage': 100.0, 'hit_id': 'contig00008 ' 'len=2292 ' 'cov=2.6 ' 'corr=0 ' 'origname=NODE_11_length_2292_cov_2.631409_pilon ' 'sw=shovill-spades/1.1.0 ' 'date=20220302:1703..2104:rep14a_2_ORF1(pKQ10)_EFU01917:99.502488', 'identity': 99.5, 'note': 'ORF1(pKQ10)', 'plasmid': 'rep14a', 'position_in_ref': '1..402', 'positions_in_contig': '1703..2104', 'template_length': 402}}}}, 'run_info': {'date': '09.09.2022', 'time': '08:52:55'}, 'user_input': {'file_format': 'fasta', 'filename(s)': ['/tmp/tmpj3aqa6lu/files/9/6/4/dataset_9649367d-27ab-42b3-8f51-56f81f942d9c.dat'], 'method': 'blast'}}}