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comparison plink.xml @ 3:57ac42ec1be3 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit fa78db02447a8f83bd61825eff2d58f449c0280b"
author iuc
date Fri, 25 Sep 2020 17:48:45 +0000
parents 0d43871f45ac
children ac16d24f0d9d
comparison
equal deleted inserted replaced
2:0d43871f45ac 3:57ac42ec1be3
612 <option value='Yes'/> 612 <option value='Yes'/>
613 </param> 613 </param>
614 <when value='No'/> 614 <when value='No'/>
615 <when value='Yes'> 615 <when value='Yes'>
616 <param name='sex_select' type='select' label='Sex select' help='Filter by phenotypes, experiment, and founder state.'> 616 <param name='sex_select' type='select' label='Sex select' help='Filter by phenotypes, experiment, and founder state.'>
617 <option value=''>Do not specifically filter out based on sex or founders</option>
617 <option value='--filter-cases'>Only include cases</option> 618 <option value='--filter-cases'>Only include cases</option>
618 <option value='--filter-controls'>Only include controls</option> 619 <option value='--filter-controls'>Only include controls</option>
619 <option value='--filter-males'>Only include males</option> 620 <option value='--filter-males'>Only include males</option>
620 <option value='--filter-females'>Only include females</option> 621 <option value='--filter-females'>Only include females</option>
621 <option value='--filter-founders'>Exclude all samples with at least one known parental ID</option> 622 <option value='--filter-founders'>Exclude all samples with at least one known parental ID</option>
622 <option value='--filter-nonfounders'>Only include samples with at least one known parental ID</option> 623 <option value='--filter-nonfounders'>Only include samples with at least one known parental ID</option>
623 </param> 624 </param>
624 <param name='no_sex_select' type='select' label='No sex settings' optional='true' help='How to deal with ambiguous sex phenotypes'> 625 <param name='no_sex_select' type='select' label='No sex settings' optional='true' help='How to deal with ambiguous sex phenotypes'>
626 <option value=''>Change nothing with regards to ambiguous sex samples</option>
625 <option value='--allow-no-sex'>Prevent samples with ambiguous sex frim having their phenotypes set to missing when analysis commands are run</option> 627 <option value='--allow-no-sex'>Prevent samples with ambiguous sex frim having their phenotypes set to missing when analysis commands are run</option>
626 <option value='--must-have-sex'>Force phenotypes of ambiguous-sex samples to missing in output</option> 628 <option value='--must-have-sex'>Force phenotypes of ambiguous-sex samples to missing in output</option>
627 </param> 629 </param>
628 <param name='nonfounders' type='boolean' label='Nonfouders' truevalue='--nonfounders' falsevalue='' checked='false' help='Include nonfounders in --freq[x] or --maf/--max-maf/--hwe calculations'/> 630 <param name='nonfounders' type='boolean' label='Nonfouders' truevalue='--nonfounders' falsevalue='' checked='false' help='Include nonfounders in --freq[x] or --maf/--max-maf/--hwe calculations'/>
629 </when> 631 </when>