Mercurial > repos > iuc > plink

comparison test-data/out.hardy @ 0:a98caf1d69ab draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"
author iuc
date Mon, 21 Sep 2020 10:09:22 +0000
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comparison
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-1:000000000000 0:a98caf1d69ab
1 CHR SNP TEST A1 A2 GENO O(HET) E(HET) P
2 1 snp0 ALL A B 42/104/54 0.52 0.4982 0.5729
3 1 snp0 AFF A B 21/55/25 0.5446 0.4992 0.4284
4 1 snp0 UNAFF A B 21/49/29 0.4949 0.4967 1
5 1 snp1 ALL A B 49/97/54 0.485 0.4997 0.6729
6 1 snp1 AFF A B 19/51/31 0.505 0.4929 1
7 1 snp1 UNAFF A B 30/46/23 0.4646 0.4975 0.5457
8 1 snp2 ALL A B 47/101/52 0.505 0.4997 1
9 1 snp2 AFF A B 21/51/29 0.505 0.4969 1
10 1 snp2 UNAFF A B 26/50/23 0.5051 0.4995 1
11 1 snp3 ALL B A 48/100/52 0.5 0.4998 1
12 1 snp3 AFF B A 22/56/23 0.5545 0.5 0.3238
13 1 snp3 UNAFF B A 26/44/29 0.4444 0.4995 0.3141
14 1 snp4 ALL B A 53/93/54 0.465 0.5 0.3243
15 1 snp4 AFF B A 28/43/30 0.4257 0.4998 0.1627
16 1 snp4 UNAFF B A 25/50/24 0.5051 0.4999 1
17 1 snp5 ALL B A 42/108/50 0.54 0.4992 0.3209
18 1 snp5 AFF B A 26/53/22 0.5248 0.4992 0.6923
19 1 snp5 UNAFF B A 16/55/28 0.5556 0.4927 0.3064
20 1 snp6 ALL A B 48/104/48 0.52 0.5 0.6713
21 1 snp6 AFF A B 26/49/26 0.4851 0.5 0.8422
22 1 snp6 UNAFF A B 22/55/22 0.5556 0.5 0.3192
23 1 snp7 ALL A B 42/114/44 0.57 0.5 0.06552
24 1 snp7 AFF A B 23/56/22 0.5545 0.5 0.3238
25 1 snp7 UNAFF A B 19/58/22 0.5859 0.4995 0.1097
26 1 snp8 ALL B A 49/95/56 0.475 0.4994 0.4818
27 1 snp8 AFF B A 26/50/25 0.495 0.5 1
28 1 snp8 UNAFF B A 23/45/31 0.4545 0.4967 0.4204
29 1 snp9 ALL A B 39/106/55 0.53 0.4968 0.3944
30 1 snp9 AFF A B 24/49/28 0.4851 0.4992 0.8421
31 1 snp9 UNAFF A B 15/57/27 0.5758 0.4927 0.1518
32 1 snp10 ALL B A 41/109/50 0.545 0.499 0.2563
33 1 snp10 AFF B A 21/54/26 0.5347 0.4988 0.5519
34 1 snp10 UNAFF B A 20/55/24 0.5556 0.4992 0.3173
35 1 snp11 ALL B A 44/101/55 0.505 0.4985 0.8881
36 1 snp11 AFF B A 20/53/28 0.5248 0.4969 0.6894
37 1 snp11 UNAFF B A 24/48/27 0.4848 0.4995 0.8406
38 1 snp12 ALL B A 40/109/51 0.545 0.4985 0.2051
39 1 snp12 AFF B A 22/57/22 0.5644 0.5 0.2364
40 1 snp12 UNAFF B A 18/52/29 0.5253 0.4938 0.6836
41 1 snp13 ALL A B 50/99/51 0.495 0.5 0.8881
42 1 snp13 AFF A B 20/49/32 0.4851 0.4929 0.8426
43 1 snp13 UNAFF A B 30/50/19 0.5051 0.4938 1
44 1 snp14 ALL B A 49/98/53 0.49 0.4998 0.7784
45 1 snp14 AFF B A 24/48/29 0.4752 0.4988 0.6902
46 1 snp14 UNAFF B A 25/50/24 0.5051 0.4999 1
47 1 snp15 ALL A B 41/107/52 0.535 0.4985 0.3245
48 1 snp15 AFF A B 24/55/22 0.5446 0.4998 0.4297
49 1 snp15 UNAFF A B 17/52/30 0.5253 0.4914 0.5456
50 1 snp16 ALL A B 44/100/56 0.5 0.4982 1
51 1 snp16 AFF A B 21/51/29 0.505 0.4969 1
52 1 snp16 UNAFF A B 23/49/27 0.4949 0.4992 1
53 1 snp39 ALL B A 36/113/51 0.565 0.4972 0.06513
54 1 snp39 AFF B A 18/52/31 0.5149 0.4917 0.6903
55 1 snp39 UNAFF B A 18/61/20 0.6162 0.4998 0.02774
56 1 snp40 ALL B A 53/91/56 0.455 0.4999 0.205
57 1 snp40 AFF B A 30/46/25 0.4554 0.4988 0.4251
58 1 snp40 UNAFF B A 23/45/31 0.4545 0.4967 0.4204
59 1 snp41 ALL B A 44/105/51 0.525 0.4994 0.5708
60 1 snp41 AFF B A 19/55/27 0.5446 0.4969 0.4239
61 1 snp41 UNAFF B A 25/50/24 0.5051 0.4999 1
62 1 snp42 ALL B A 51/97/52 0.485 0.5 0.6728
63 1 snp42 AFF B A 27/43/31 0.4257 0.4992 0.1625
64 1 snp42 UNAFF B A 24/54/21 0.5455 0.4995 0.4246
65 1 snp44 ALL A B 44/108/48 0.54 0.4998 0.3216
66 1 snp44 AFF A B 19/54/28 0.5347 0.496 0.5475
67 1 snp44 UNAFF A B 25/54/20 0.5455 0.4987 0.4229
68 1 snp46 ALL A B 45/105/50 0.525 0.4997 0.5711
69 1 snp46 AFF A B 17/54/30 0.5347 0.4917 0.4253
70 1 snp46 UNAFF A B 28/51/20 0.5152 0.4967 0.84
71 1 snp48 ALL B A 50/96/54 0.48 0.4998 0.5735
72 1 snp48 AFF B A 32/41/28 0.4059 0.4992 0.07221
73 1 snp48 UNAFF B A 18/55/26 0.5556 0.4967 0.3123
74 23 snp17 ALL B A 43/105/52 0.525 0.499 0.5705
75 23 snp17 AFF B A 23/51/27 0.505 0.4992 1
76 23 snp17 UNAFF B A 20/54/25 0.5455 0.4987 0.4229
77 23 snp18 ALL B A 46/101/53 0.505 0.4994 1
78 23 snp18 AFF B A 23/53/25 0.5248 0.4998 0.6931
79 23 snp18 UNAFF B A 23/48/28 0.4848 0.4987 0.8405
80 23 snp19 ALL A B 48/101/51 0.505 0.4999 1
81 23 snp19 AFF A B 24/49/28 0.4851 0.4992 0.8421
82 23 snp19 UNAFF A B 24/52/23 0.5253 0.4999 0.6904
83 23 snp20 ALL A B 52/92/56 0.46 0.4998 0.26
84 23 snp20 AFF A B 26/48/27 0.4752 0.5 0.6905
85 23 snp20 UNAFF A B 26/44/29 0.4444 0.4995 0.3141
86 23 snp21 ALL A B 39/97/64 0.485 0.4922 0.8858
87 23 snp21 AFF A B 22/49/30 0.4851 0.4969 0.842
88 23 snp21 UNAFF A B 17/48/34 0.4848 0.4853 1
89 23 snp22 ALL A B 48/92/60 0.46 0.4982 0.3199
90 23 snp22 AFF A B 21/49/31 0.4851 0.4951 0.8422
91 23 snp22 UNAFF A B 27/43/29 0.4343 0.4998 0.2269
92 23 snp23 ALL B A 50/97/53 0.485 0.4999 0.6729
93 23 snp23 AFF B A 30/43/28 0.4257 0.4998 0.1627
94 23 snp23 UNAFF B A 20/54/25 0.5455 0.4987 0.4229
95 23 snp24 ALL A B 50/99/51 0.495 0.5 0.8881
96 23 snp24 AFF A B 25/46/30 0.4554 0.4988 0.4251
97 23 snp24 UNAFF A B 25/53/21 0.5354 0.4992 0.5487
98 23 snp25 ALL A B 45/99/56 0.495 0.4985 1
99 23 snp25 AFF A B 21/55/25 0.5446 0.4992 0.4284
100 23 snp25 UNAFF A B 24/44/31 0.4444 0.4975 0.3136
101 23 snp26 ALL B A 48/93/59 0.465 0.4985 0.3942
102 23 snp26 AFF B A 21/46/34 0.4554 0.4917 0.543
103 23 snp26 UNAFF B A 27/47/25 0.4747 0.4998 0.6875
104 23 snp27 ALL A B 46/100/54 0.5 0.4992 1
105 23 snp27 AFF A B 25/50/26 0.495 0.5 1
106 23 snp27 UNAFF A B 21/50/28 0.5051 0.4975 1
107 23 snp28 ALL B A 46/106/48 0.53 0.5 0.4793
108 23 snp28 AFF B A 26/53/22 0.5248 0.4992 0.6923
109 23 snp28 UNAFF B A 20/53/26 0.5354 0.4982 0.5469
110 23 snp29 ALL B A 53/89/58 0.445 0.4997 0.1213
111 23 snp29 AFF B A 24/43/34 0.4257 0.4951 0.1627
112 23 snp29 UNAFF B A 29/46/24 0.4646 0.4987 0.5458
113 23 snp30 ALL A B 49/96/55 0.48 0.4996 0.5736
114 23 snp30 AFF A B 26/49/26 0.4851 0.5 0.8422
115 23 snp30 UNAFF A B 23/47/29 0.4747 0.4982 0.6872
116 23 snp31 ALL B A 44/100/56 0.5 0.4982 1
117 23 snp31 AFF B A 21/48/32 0.4752 0.4941 0.6908
118 23 snp31 UNAFF B A 23/52/24 0.5253 0.4999 0.6904
119 23 snp32 ALL B A 49/94/57 0.47 0.4992 0.3988
120 23 snp32 AFF B A 25/45/31 0.4455 0.4982 0.3186
121 23 snp32 UNAFF B A 24/49/26 0.4949 0.4998 1
122 23 snp33 ALL A B 47/102/51 0.51 0.4998 0.8874
123 23 snp33 AFF A B 24/54/23 0.5347 0.5 0.5541
124 23 snp33 UNAFF A B 23/48/28 0.4848 0.4987 0.8405
125 23 snp34 ALL B A 43/108/49 0.54 0.4996 0.3213
126 23 snp34 AFF B A 17/58/26 0.5743 0.496 0.1599
127 23 snp34 UNAFF B A 26/50/23 0.5051 0.4995 1
128 23 snp35 ALL B A 47/102/51 0.51 0.4998 0.8874
129 23 snp35 AFF B A 22/51/28 0.505 0.4982 1
130 23 snp35 UNAFF B A 25/51/23 0.5152 0.4998 0.8421
131 23 snp36 ALL A B 45/101/54 0.505 0.499 1
132 23 snp36 AFF A B 25/51/25 0.505 0.5 1
133 23 snp36 UNAFF A B 20/50/29 0.5051 0.4959 1
134 23 snp37 ALL A B 47/100/53 0.5 0.4996 1
135 23 snp37 AFF A B 23/56/22 0.5545 0.5 0.3238
136 23 snp37 UNAFF A B 24/44/31 0.4444 0.4975 0.3136
137 23 snp38 ALL B A 46/106/48 0.53 0.5 0.4793
138 23 snp38 AFF B A 18/53/30 0.5248 0.4929 0.6859
139 23 snp38 UNAFF B A 28/53/18 0.5354 0.4949 0.5421
140 23 snp43 ALL A B 48/103/49 0.515 0.5 0.7772
141 23 snp43 AFF A B 24/54/23 0.5347 0.5 0.5541
142 23 snp43 UNAFF A B 24/49/26 0.4949 0.4998 1
143 23 snp45 ALL A B 42/98/60 0.49 0.496 0.8869
144 23 snp45 AFF A B 22/49/30 0.4851 0.4969 0.842
145 23 snp45 UNAFF A B 20/49/30 0.4949 0.4949 1
146 23 snp47 ALL B A 45/102/53 0.51 0.4992 0.8873
147 23 snp47 AFF B A 24/46/31 0.4554 0.4976 0.425
148 23 snp47 UNAFF B A 21/56/22 0.5657 0.4999 0.2316
149 23 snp49 ALL A B 54/88/58 0.44 0.4998 0.09091
150 23 snp49 AFF A B 24/47/30 0.4653 0.4982 0.5497
151 23 snp49 UNAFF A B 30/41/28 0.4141 0.4998 0.1068