Mercurial > repos > iuc > plink
diff test-data/out.assoc.fisher.adjusted @ 8:16d22eee0fe3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit b63133897598f2881de7bad1f18fcd69d7d7e9df"
| author | iuc |
|---|---|
| date | Thu, 02 Dec 2021 16:20:30 +0000 |
| parents | a98caf1d69ab |
| children |
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--- a/test-data/out.assoc.fisher.adjusted Mon Oct 05 16:08:24 2020 +0000 +++ b/test-data/out.assoc.fisher.adjusted Thu Dec 02 16:20:30 2021 +0000 @@ -1,51 +1,51 @@ CHR SNP UNADJ GC QQ BONF HOLM SIDAK_SS SIDAK_SD FDR_BH FDR_BY - 1 snp13 1.369 1.369 2 0 0 0.05171 0.05171 0.05883 0 - 1 snp45 1.276 1.276 1.523 0 0 0.02964 0.03136 0.05883 0 - 1 snp22 1.188 1.188 1.301 0 0 0.01545 0.01771 0.05883 0 - 1 snp1 1.019 1.019 1.155 0 0 0.002837 0.003842 0.05883 0 - 1 snp5 0.8623 0.8623 1.046 0 0 0.0002697 0.000487 0.05883 0 - 1 snp15 0.7893 0.7893 0.9586 0 0 6.152e-05 0.0001493 0.05883 0 - 1 snp33 0.7185 0.7185 0.8861 0 0 1.07e-05 3.822e-05 0.05883 0 - 1 snp36 0.717 0.717 0.8239 0 0 1.028e-05 3.822e-05 0.05883 0 - 1 snp21 0.6489 0.6489 0.7696 0 0 1.314e-06 1.004e-05 0.05883 0 - 1 snp18 0.6487 0.6487 0.7212 0 0 1.303e-06 1.004e-05 0.05883 0 - 1 snp23 0.5838 0.5838 0.6778 0 0 1.195e-07 2.452e-06 0.05883 0 - 1 snp12 0.5228 0.5228 0.6383 0 0 7.772e-09 3.935e-07 0.05883 0 - 1 snp41 0.5219 0.5219 0.6021 0 0 7.455e-09 3.935e-07 0.05883 0 - 1 snp17 0.4642 0.4642 0.5686 0 0 3.191e-10 7.563e-08 0.05883 0 - 1 snp2 0.4625 0.4625 0.5376 0 0 2.869e-10 7.563e-08 0.05883 0 - 1 snp35 0.4622 0.4622 0.5086 0 0 2.825e-10 7.563e-08 0.05883 0 - 1 snp28 0.4103 0.4103 0.4815 0 0 8.864e-12 2.336e-08 0.05883 0 - 1 snp38 0.4069 0.4069 0.4559 0 0 6.895e-12 2.336e-08 0.05883 0 - 1 snp43 0.4064 0.4064 0.4318 0 0 6.662e-12 2.336e-08 0.05883 0 - 1 snp8 0.4062 0.4062 0.4089 0 0 6.539e-12 2.336e-08 0.05883 0 - 1 snp9 0.3537 0.3537 0.3872 0 0 8.607e-14 1.038e-08 0.05883 0 - 1 snp19 0.3524 0.3524 0.3665 0 0 7.618e-14 1.038e-08 0.05883 0 - 1 snp44 0.3523 0.3523 0.3468 0 0 7.575e-14 1.038e-08 0.05883 0 - 1 snp31 0.352 0.352 0.3279 0 0 7.348e-14 1.038e-08 0.05883 0 - 1 snp29 0.3018 0.3018 0.3098 0 0 4.339e-16 6.787e-09 0.05883 0 - 1 snp30 0.3011 0.3011 0.2924 0 0 3.857e-16 6.787e-09 0.05883 0 - 1 snp42 0.3011 0.3011 0.2757 0 0 3.857e-16 6.787e-09 0.05883 0 - 1 snp49 0.3011 0.3011 0.2596 0 0 3.857e-16 6.787e-09 0.05883 0 - 1 snp34 0.253 0.253 0.2441 0 0 0 6.732e-09 0.05883 0 - 1 snp37 0.2529 0.2529 0.2291 0 0 0 6.732e-09 0.05883 0 - 1 snp40 0.2528 0.2528 0.2147 0 0 0 6.732e-09 0.05883 0 - 1 snp20 0.2526 0.2526 0.2007 0 0 0 6.732e-09 0.05883 0 - 1 snp48 0.2072 0.2072 0.1871 0 0 0 6.732e-09 0.05814 0 - 1 snp14 0.207 0.207 0.1739 0 0 0 6.732e-09 0.05814 0 - 1 snp0 0.1643 0.1643 0.1612 0 0 0 4.076e-09 0.05814 0 - 1 snp11 0.1642 0.1642 0.1487 0 0 0 4.076e-09 0.05814 0 - 1 snp7 0.1639 0.1639 0.1367 0 0 0 4.076e-09 0.05814 0 - 1 snp26 0.1638 0.1638 0.1249 0 0 0 4.076e-09 0.05814 0 - 1 snp32 0.1235 0.1235 0.1135 0 0 0 4.076e-09 0.05814 0 - 1 snp16 0.1235 0.1235 0.1024 0 0 0 4.076e-09 0.05814 0 - 1 snp25 0.1234 0.1234 0.09151 0 0 0 4.076e-09 0.05814 0 - 1 snp39 0.1233 0.1233 0.08092 0 0 0 4.076e-09 0.05814 0 - 1 snp46 0.1233 0.1233 0.07058 0 0 0 4.076e-09 0.05814 0 - 1 snp47 0.08552 0.08552 0.06048 0 0 0 4.076e-09 0.05814 0 - 1 snp3 0.08512 0.08512 0.05061 0 0 0 4.076e-09 0.05814 0 - 1 snp27 0.08512 0.08512 0.04096 0 0 0 4.076e-09 0.05814 0 - 1 snp4 0.08501 0.08501 0.03152 0 0 0 4.076e-09 0.05814 0 - 1 snp24 0.04939 0.04939 0.02228 0 0 0 4.076e-09 0.03167 0 - 1 snp6 0.0159 0.0159 0.01323 0 0 0 4.076e-09 0.01585 0 - 1 snp10 0.01585 0.01585 0.004365 0 0 0 4.076e-09 0.01585 0 + 1 snp13 1.605 1.605 2 0 0 0.1455 0.1455 0.1672 0 + 1 snp45 1.495 1.495 1.523 0 0 0.09512 0.09865 0.1672 0 + 1 snp22 1.389 1.389 1.301 0 0 0.0577 0.06309 0.1672 0 + 1 snp1 1.187 1.187 1.155 0 0 0.01536 0.01887 0.09243 0 + 1 snp5 1.001 1.001 1.046 0 0 0.00228 0.003475 0.09243 0 + 1 snp15 0.9147 0.9147 0.9586 0 0 0.0006612 0.001266 0.09243 0 + 1 snp33 0.8308 0.8308 0.8861 0 0 0.0001477 0.0003853 0.09243 0 + 1 snp36 0.8291 0.8291 0.8239 0 0 0.0001428 0.0003853 0.09243 0 + 1 snp21 0.7487 0.7487 0.7696 0 0 2.357e-05 0.0001135 0.09243 0 + 1 snp18 0.7485 0.7485 0.7212 0 0 2.34e-05 0.0001135 0.09243 0 + 1 snp23 0.6721 0.6721 0.6778 0 0 2.771e-06 3.032e-05 0.09243 0 + 1 snp12 0.6004 0.6004 0.6383 0 0 2.311e-07 5.548e-06 0.09243 0 + 1 snp41 0.5995 0.5995 0.6021 0 0 2.225e-07 5.548e-06 0.09243 0 + 1 snp17 0.5319 0.5319 0.5686 0 0 1.212e-08 1.116e-06 0.09243 0 + 1 snp2 0.5299 0.5299 0.5376 0 0 1.098e-08 1.116e-06 0.09243 0 + 1 snp35 0.5296 0.5296 0.5086 0 0 1.082e-08 1.116e-06 0.09243 0 + 1 snp28 0.4689 0.4689 0.4815 0 0 4.225e-10 3.233e-07 0.09243 0 + 1 snp38 0.465 0.465 0.4559 0 0 3.334e-10 3.233e-07 0.09243 0 + 1 snp43 0.4644 0.4644 0.4318 0 0 3.228e-10 3.233e-07 0.09243 0 + 1 snp8 0.4641 0.4641 0.4089 0 0 3.171e-10 3.233e-07 0.09243 0 + 1 snp9 0.4031 0.4031 0.3872 0 0 5.202e-12 1.216e-07 0.09243 0 + 1 snp19 0.4016 0.4016 0.3665 0 0 4.628e-12 1.216e-07 0.09243 0 + 1 snp44 0.4015 0.4015 0.3468 0 0 4.604e-12 1.216e-07 0.09243 0 + 1 snp31 0.4011 0.4011 0.3279 0 0 4.473e-12 1.216e-07 0.09243 0 + 1 snp29 0.343 0.343 0.3098 0 0 3.158e-14 6.397e-08 0.09243 0 + 1 snp30 0.3422 0.3422 0.2924 0 0 2.917e-14 6.397e-08 0.09243 0 + 1 snp42 0.3422 0.3422 0.2757 0 0 2.917e-14 6.397e-08 0.09243 0 + 1 snp49 0.3422 0.3422 0.2596 0 0 2.917e-14 6.397e-08 0.09243 0 + 1 snp34 0.2867 0.2867 0.2441 0 0 4.822e-17 4.889e-08 0.09243 0 + 1 snp37 0.2866 0.2866 0.2291 0 0 4.822e-17 4.889e-08 0.09243 0 + 1 snp40 0.2864 0.2864 0.2147 0 0 4.822e-17 4.889e-08 0.09243 0 + 1 snp20 0.2862 0.2862 0.2007 0 0 4.822e-17 4.889e-08 0.09243 0 + 1 snp48 0.234 0.234 0.1871 0 0 0 4.889e-08 0.07281 0 + 1 snp14 0.2338 0.2338 0.1739 0 0 0 4.889e-08 0.07281 0 + 1 snp0 0.185 0.185 0.1612 0 0 0 1.905e-08 0.07281 0 + 1 snp11 0.1848 0.1848 0.1487 0 0 0 1.905e-08 0.07281 0 + 1 snp7 0.1845 0.1845 0.1367 0 0 0 1.905e-08 0.07281 0 + 1 snp26 0.1845 0.1845 0.1249 0 0 0 1.905e-08 0.07281 0 + 1 snp32 0.1386 0.1386 0.1135 0 0 0 1.905e-08 0.07281 0 + 1 snp16 0.1386 0.1386 0.1024 0 0 0 1.905e-08 0.07281 0 + 1 snp25 0.1384 0.1384 0.09151 0 0 0 1.905e-08 0.07281 0 + 1 snp39 0.1384 0.1384 0.08092 0 0 0 1.905e-08 0.07281 0 + 1 snp46 0.1383 0.1383 0.07058 0 0 0 1.905e-08 0.07281 0 + 1 snp47 0.09563 0.09563 0.06048 0 0 0 1.905e-08 0.06819 0 + 1 snp3 0.09519 0.09519 0.05061 0 0 0 1.905e-08 0.06819 0 + 1 snp27 0.09519 0.09519 0.04096 0 0 0 1.905e-08 0.06819 0 + 1 snp4 0.09506 0.09506 0.03152 0 0 0 1.905e-08 0.06819 0 + 1 snp24 0.05503 0.05503 0.02228 0 0 0 1.905e-08 0.03731 0 + 1 snp6 0.01765 0.01765 0.01323 0 0 0 1.905e-08 0.01759 0 + 1 snp10 0.01759 0.01759 0.004365 0 0 0 1.905e-08 0.01759 0