Mercurial > repos > iuc > plink
diff test-data/out.assoc.logistic.adjusted @ 8:16d22eee0fe3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit b63133897598f2881de7bad1f18fcd69d7d7e9df"
| author | iuc |
|---|---|
| date | Thu, 02 Dec 2021 16:20:30 +0000 |
| parents | a98caf1d69ab |
| children |
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--- a/test-data/out.assoc.logistic.adjusted Mon Oct 05 16:08:24 2020 +0000 +++ b/test-data/out.assoc.logistic.adjusted Thu Dec 02 16:20:30 2021 +0000 @@ -1,51 +1,51 @@ CHR SNP UNADJ GC QQ BONF HOLM SIDAK_SS SIDAK_SD FDR_BH FDR_BY - 1 snp13 1.206 1.206 2 0 0 0.01789 0.01789 0.07645 0 - 1 snp45 1.102 1.102 1.523 0 0 0.00711 0.007727 0.07645 0 - 1 snp17 0.9342 0.9342 1.301 0 0 0.0008958 0.001148 0.07645 0 - 1 snp22 0.8183 0.8183 1.155 0 0 0.0001145 0.0001877 0.07645 0 - 1 snp20 0.8014 0.8014 1.046 0 0 8.017e-05 0.0001595 0.07645 0 - 1 snp44 0.8006 0.8006 0.9586 0 0 7.882e-05 0.0001595 0.07645 0 - 1 snp36 0.7579 0.7579 0.8861 0 0 2.957e-05 9.353e-05 0.07645 0 - 1 snp31 0.6928 0.6928 0.8239 0 0 5.183e-06 2.534e-05 0.07645 0 - 1 snp15 0.6903 0.6903 0.7696 0 0 4.808e-06 2.534e-05 0.07645 0 - 1 snp48 0.6789 0.6789 0.7212 0 0 3.424e-06 2.534e-05 0.07645 0 - 1 snp33 0.6431 0.6431 0.6778 0 0 1.081e-06 1.427e-05 0.07645 0 - 1 snp21 0.603 0.603 0.6383 0 0 2.545e-07 5.98e-06 0.07645 0 - 1 snp12 0.5857 0.5857 0.6021 0 0 1.294e-07 4.766e-06 0.07645 0 - 1 snp1 0.5664 0.5664 0.5686 0 0 5.787e-08 3.548e-06 0.07645 0 - 1 snp38 0.556 0.556 0.5376 0 0 3.669e-08 3.508e-06 0.07645 0 - 1 snp5 0.4872 0.4872 0.5086 0 0 1.204e-09 4.444e-07 0.07645 0 - 1 snp3 0.481 0.481 0.4815 0 0 8.504e-10 4.444e-07 0.07645 0 - 1 snp8 0.4704 0.4704 0.4559 0 0 4.595e-10 4.444e-07 0.07645 0 - 1 snp32 0.4704 0.4704 0.4318 0 0 4.595e-10 4.444e-07 0.07645 0 - 1 snp18 0.4704 0.4704 0.4089 0 0 4.595e-10 4.444e-07 0.07645 0 - 1 snp40 0.3898 0.3898 0.3872 0 0 1.868e-12 6.575e-08 0.07645 0 - 1 snp2 0.384 0.384 0.3665 0 0 1.173e-12 6.575e-08 0.07645 0 - 1 snp4 0.3765 0.3765 0.3468 0 0 6.289e-13 6.575e-08 0.07645 0 - 1 snp35 0.3083 0.3083 0.3279 0 0 8.679e-16 5.034e-09 0.07645 0 - 1 snp26 0.3015 0.3015 0.3098 0 0 3.857e-16 5.034e-09 0.07645 0 - 1 snp42 0.3015 0.3015 0.2924 0 0 3.857e-16 5.034e-09 0.07645 0 - 1 snp43 0.2988 0.2988 0.2757 0 0 2.893e-16 5.034e-09 0.07645 0 - 1 snp0 0.2988 0.2988 0.2596 0 0 2.893e-16 5.034e-09 0.07645 0 - 1 snp14 0.2953 0.2953 0.2441 0 0 1.929e-16 5.034e-09 0.07645 0 - 1 snp28 0.2888 0.2888 0.2291 0 0 9.643e-17 5.034e-09 0.07645 0 - 1 snp39 0.2841 0.2841 0.2147 0 0 4.822e-17 5.034e-09 0.07645 0 - 1 snp6 0.23 0.23 0.2007 0 0 0 5.034e-09 0.06545 0 - 1 snp46 0.2257 0.2257 0.1871 0 0 0 5.034e-09 0.06545 0 - 1 snp25 0.2219 0.2219 0.1739 0 0 0 5.034e-09 0.06545 0 - 1 snp37 0.2203 0.2203 0.1612 0 0 0 5.034e-09 0.06545 0 - 1 snp41 0.1538 0.1538 0.1487 0 0 0 5.034e-09 0.04969 0 - 1 snp34 0.1503 0.1503 0.1367 0 0 0 5.034e-09 0.04969 0 - 1 snp19 0.1501 0.1501 0.1249 0 0 0 5.034e-09 0.04969 0 - 1 snp27 0.1497 0.1497 0.1135 0 0 0 5.034e-09 0.04969 0 - 1 snp30 0.1466 0.1466 0.1024 0 0 0 5.034e-09 0.04969 0 - 1 snp10 0.08608 0.08608 0.09151 0 0 0 5.034e-09 0.03893 0 - 1 snp24 0.08365 0.08365 0.08092 0 0 0 5.034e-09 0.03893 0 - 1 snp23 0.08136 0.08136 0.07058 0 0 0 5.034e-09 0.03893 0 - 1 snp16 0.07918 0.07918 0.06048 0 0 0 5.034e-09 0.03893 0 - 1 snp49 0.07711 0.07711 0.05061 0 0 0 5.034e-09 0.03893 0 - 1 snp29 0.07514 0.07514 0.04096 0 0 0 5.034e-09 0.03893 0 - 1 snp47 0.0308 0.0308 0.03152 0 0 0 5.034e-09 0.02352 0 - 1 snp7 0.02483 0.02483 0.02228 0 0 0 5.034e-09 0.02352 0 - 1 snp9 0.02352 0.02352 0.01323 0 0 0 5.034e-09 0.02352 0 - 1 snp11 0.02352 0.02352 0.004365 0 0 0 5.034e-09 0.02352 0 + 1 snp13 1.352 1.352 2 0 0 0.04718 0.04718 0.1215 0 + 1 snp45 1.233 1.233 1.523 0 0 0.02192 0.02332 0.1215 0 + 1 snp17 1.043 1.043 1.301 0 0 0.003779 0.004573 0.1215 0 + 1 snp22 0.9115 0.9115 1.155 0 0 0.0006276 0.0009296 0.1215 0 + 1 snp20 0.8924 0.8924 1.046 0 0 0.000458 0.0007929 0.1215 0 + 1 snp44 0.8915 0.8915 0.9586 0 0 0.0004512 0.0007929 0.1215 0 + 1 snp36 0.8432 0.8432 0.8861 0 0 0.0001884 0.0004772 0.1215 0 + 1 snp31 0.7697 0.7697 0.8239 0 0 3.917e-05 0.0001443 0.1215 0 + 1 snp15 0.7668 0.7668 0.7696 0 0 3.658e-05 0.0001443 0.1215 0 + 1 snp48 0.754 0.754 0.7212 0 0 2.686e-05 0.0001443 0.1215 0 + 1 snp33 0.7136 0.7136 0.6778 0 0 9.36e-06 8.028e-05 0.1215 0 + 1 snp21 0.6684 0.6684 0.6383 0 0 2.469e-06 3.519e-05 0.1215 0 + 1 snp12 0.649 0.649 0.6021 0 0 1.319e-06 2.783e-05 0.1215 0 + 1 snp1 0.6273 0.6273 0.5686 0 0 6.239e-07 2.062e-05 0.1215 0 + 1 snp38 0.6155 0.6155 0.5376 0 0 4.079e-07 1.987e-05 0.1215 0 + 1 snp5 0.5383 0.5383 0.5086 0 0 1.641e-08 2.766e-06 0.1215 0 + 1 snp3 0.5314 0.5314 0.4815 0 0 1.181e-08 2.766e-06 0.1215 0 + 1 snp8 0.5194 0.5194 0.4559 0 0 6.587e-09 2.766e-06 0.1215 0 + 1 snp32 0.5194 0.5194 0.4318 0 0 6.587e-09 2.766e-06 0.1215 0 + 1 snp18 0.5194 0.5194 0.4089 0 0 6.587e-09 2.766e-06 0.1215 0 + 1 snp40 0.4294 0.4294 0.3872 0 0 3.412e-11 3.758e-07 0.1039 0 + 1 snp2 0.4229 0.4229 0.3665 0 0 2.18e-11 3.758e-07 0.1039 0 + 1 snp4 0.4144 0.4144 0.3468 0 0 1.196e-11 3.758e-07 0.1039 0 + 1 snp35 0.3384 0.3384 0.3279 0 0 2.035e-14 2.753e-08 0.1039 0 + 1 snp26 0.3309 0.3309 0.3098 0 0 9.595e-15 2.753e-08 0.1039 0 + 1 snp42 0.3309 0.3309 0.2924 0 0 9.595e-15 2.753e-08 0.1039 0 + 1 snp43 0.3279 0.3279 0.2757 0 0 7.088e-15 2.753e-08 0.1039 0 + 1 snp0 0.3279 0.3279 0.2596 0 0 7.088e-15 2.753e-08 0.1039 0 + 1 snp14 0.324 0.324 0.2441 0 0 4.725e-15 2.753e-08 0.1039 0 + 1 snp28 0.3169 0.3169 0.2291 0 0 2.218e-15 2.753e-08 0.1039 0 + 1 snp39 0.3115 0.3115 0.2147 0 0 1.254e-15 2.753e-08 0.1039 0 + 1 snp6 0.2516 0.2516 0.2007 0 0 0 2.753e-08 0.08605 0 + 1 snp46 0.2469 0.2469 0.1871 0 0 0 2.753e-08 0.08605 0 + 1 snp25 0.2427 0.2427 0.1739 0 0 0 2.753e-08 0.08605 0 + 1 snp37 0.241 0.241 0.1612 0 0 0 2.753e-08 0.08605 0 + 1 snp41 0.1675 0.1675 0.1487 0 0 0 1.646e-08 0.06276 0 + 1 snp34 0.1638 0.1638 0.1367 0 0 0 1.646e-08 0.06276 0 + 1 snp19 0.1635 0.1635 0.1249 0 0 0 1.646e-08 0.06276 0 + 1 snp27 0.1631 0.1631 0.1135 0 0 0 1.646e-08 0.06276 0 + 1 snp30 0.1597 0.1597 0.1024 0 0 0 1.646e-08 0.06276 0 + 1 snp10 0.09339 0.09339 0.09151 0 0 0 1.646e-08 0.04525 0 + 1 snp24 0.09075 0.09075 0.08092 0 0 0 1.646e-08 0.04525 0 + 1 snp23 0.08824 0.08824 0.07058 0 0 0 1.646e-08 0.04525 0 + 1 snp16 0.08587 0.08587 0.06048 0 0 0 1.646e-08 0.04525 0 + 1 snp49 0.08361 0.08361 0.05061 0 0 0 1.646e-08 0.04525 0 + 1 snp29 0.08146 0.08146 0.04096 0 0 0 1.646e-08 0.04525 0 + 1 snp47 0.03328 0.03328 0.03152 0 0 0 1.646e-08 0.0254 0 + 1 snp7 0.02681 0.02681 0.02228 0 0 0 1.646e-08 0.0254 0 + 1 snp9 0.0254 0.0254 0.01323 0 0 0 1.646e-08 0.0254 0 + 1 snp11 0.0254 0.0254 0.004365 0 0 0 1.646e-08 0.0254 0