view test-data/plink_log.txt @ 5:18be55ee8e08 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit d27eb518580d91d21b7004e6e6b48079eea5ff9b"
author iuc
date Tue, 29 Sep 2020 16:43:20 +0000
parents a98caf1d69ab
children
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PLINK v1.90p 64-bit (16 Jun 2020)
Options in effect:
  --bfile plink_input/plink_input
  --indep-pairwise 50 5 0.2
  --make-bed
  --out plink_output/plink_output

Hostname: p-body.local
Working directory: /private/var/folders/f7/p887fr2x6hd_jg712040rl580000gn/T/tmpzq_so7fd/job_working_directory/000/90/working
Start time: Tue Sep 15 12:47:24 2020

Random number seed: 1600199244
32768 MB RAM detected; reserving 16384 MB for main workspace.
50 variants loaded from .bim file.
200 people (0 males, 200 females) loaded from .fam.
200 phenotype values loaded from .fam.
Using 1 thread (no multithreaded calculations invoked).
Before main variant filters, 200 founders and 0 nonfounders present.
Calculating allele frequencies... done.
50 variants and 200 people pass filters and QC.
Among remaining phenotypes, 101 are cases and 99 are controls.
--make-bed to plink_output/plink_output.bed + plink_output/plink_output.bim +
plink_output/plink_output.fam ... done.
Pruned 0 variants from chromosome 1, leaving 50.
Pruning complete.  0 of 50 variants removed.
Marker lists written to plink_output/plink_output.prune.in and
plink_output/plink_output.prune.out .

End time: Tue Sep 15 12:47:24 2020