view test-data/out.assoc.logistic @ 0:a98caf1d69ab draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 555a851b363c015f26d6fcf1f52bcbf3420a0b3b"
author iuc
date Mon, 21 Sep 2020 10:09:22 +0000
parents
children
line wrap: on
line source

 CHR     SNP         BP   A1       TEST    NMISS       BETA         STAT            P 
   1    snp0          0    A        DOM      200     0.2307       0.7225         0.47
   1    snp0          0    A  INTERCEPT      200    -0.1484           NA           NA
   1    snp1          1    A        DOM      200    -0.3807       -1.185       0.2359
   1    snp1          1    A  INTERCEPT      200     0.2985           NA           NA
   1    snp2          2    A        DOM      200    -0.2859      -0.8822       0.3777
   1    snp2          2    A  INTERCEPT      200     0.2318           NA           NA
   1    snp3          3    B        DOM      200       0.34        1.049       0.2942
   1    snp3          3    B  INTERCEPT      200    -0.2318           NA           NA
   1    snp4          4    B        DOM      200     -0.278      -0.8685       0.3851
   1    snp4          4    B  INTERCEPT      200     0.2231           NA           NA
   1    snp5          5    B        DOM      200     0.3479        1.059       0.2895
   1    snp5          5    B  INTERCEPT      200    -0.2412           NA           NA
   1    snp6          6    A        DOM      200    -0.1934      -0.5824       0.5603
   1    snp6          6    A  INTERCEPT      200     0.1671           NA           NA
   1    snp7          7    A        DOM      200    0.02564      0.07511       0.9401
   1    snp7          7    A  INTERCEPT      200 -4.356e-07           NA           NA
   1    snp8          8    B        DOM      200     0.3263        1.031       0.3024
   1    snp8          8    B  INTERCEPT      200    -0.2151           NA           NA
   1    snp9          9    A        DOM      200   -0.02257     -0.07127       0.9432
   1    snp9          9    A  INTERCEPT      200    0.03637           NA           NA
   1   snp10         10    B        DOM      200   -0.08004      -0.2449       0.8065
   1   snp10         10    B  INTERCEPT      200    0.08004           NA           NA
   1   snp11         11    B        DOM      200   -0.02257     -0.07126       0.9432
   1   snp11         11    B  INTERCEPT      200    0.03637           NA           NA
   1   snp12         12    B        DOM      200     0.3972        1.215       0.2244
   1   snp12         12    B  INTERCEPT      200    -0.2763           NA           NA
   1   snp13         13    A        DOM      200    -0.6692        -2.01      0.04445
   1   snp13         13    A  INTERCEPT      200     0.5213           NA           NA
   1   snp14         14    B        DOM      200    -0.2301      -0.7156       0.4743
   1   snp14         14    B  INTERCEPT      200     0.1892           NA           NA
   1   snp15         15    A        DOM      200     0.4455        1.369       0.1711
   1   snp15         15    A  INTERCEPT      200    -0.3102           NA           NA
   1   snp16         16    A        DOM      200   -0.07146      -0.2268       0.8206
   1   snp16         16    A  INTERCEPT      200    0.07146           NA           NA
   1   snp17         17    B        DOM      200    -0.5592       -1.692       0.0906
   1   snp17         17    B  INTERCEPT      200     0.4383           NA           NA
   1   snp18         18    B        DOM      200     0.3263        1.031       0.3024
   1   snp18         18    B  INTERCEPT      200    -0.2151           NA           NA
   1   snp19         19    A        DOM      200    -0.1312      -0.4039       0.6863
   1   snp19         19    A  INTERCEPT      200     0.1178           NA           NA
   1   snp20         20    A        DOM      200    -0.4977       -1.522       0.1281
   1   snp20         20    A  INTERCEPT      200     0.3895           NA           NA
   1   snp21         21    A        DOM      200    -0.4155       -1.241       0.2146
   1   snp21         21    A  INTERCEPT      200     0.3365           NA           NA
   1   snp22         22    A        DOM      200    -0.5122       -1.544       0.1226
   1   snp22         22    A  INTERCEPT      200     0.4055           NA           NA
   1   snp23         23    B        DOM      200   -0.07411      -0.2325       0.8161
   1   snp23         23    B  INTERCEPT      200    0.07411           NA           NA
   1   snp24         24    A        DOM      200   -0.07696      -0.2386       0.8114
   1   snp24         24    A  INTERCEPT      200    0.07696           NA           NA
   1   snp25         25    A        DOM      200     0.1814       0.5653       0.5719
   1   snp25         25    A  INTERCEPT      200    -0.1133           NA           NA
   1   snp26         26    B        DOM      200     -0.237      -0.7277       0.4668
   1   snp26         26    B  INTERCEPT      200     0.1967           NA           NA
   1   snp27         27    A        DOM      200      0.127       0.4031       0.6869
   1   snp27         27    A  INTERCEPT      200   -0.07146           NA           NA
   1   snp28         28    B        DOM      200     0.2135       0.7029       0.4821
   1   snp28         28    B  INTERCEPT      200    -0.1252           NA           NA
   1   snp29         29    B        DOM      200   -0.06669       -0.216        0.829
   1   snp29         29    B  INTERCEPT      200    0.06669           NA           NA
   1   snp30         30    A        DOM      200    -0.1269      -0.3957       0.6924
   1   snp30         30    A  INTERCEPT      200     0.1133           NA           NA
   1   snp31         31    B        DOM      200    -0.4507       -1.372         0.17
   1   snp31         31    B  INTERCEPT      200     0.3567           NA           NA
   1   snp32         32    B        DOM      200     0.3263        1.031       0.3024
   1   snp32         32    B  INTERCEPT      200    -0.2151           NA           NA
   1   snp33         33    A        DOM      200    -0.4069       -1.301       0.1934
   1   snp33         33    A  INTERCEPT      200     0.3075           NA           NA
   1   snp34         34    B        DOM      200     0.1289       0.4045       0.6859
   1   snp34         34    B  INTERCEPT      200   -0.07411           NA           NA
   1   snp35         35    B        DOM      200      0.246       0.7409       0.4587
   1   snp35         35    B  INTERCEPT      200    -0.1671           NA           NA
   1   snp36         36    A        DOM      200    -0.4611       -1.463       0.1435
   1   snp36         36    A  INTERCEPT      200     0.3483           NA           NA
   1   snp37         37    A        DOM      200     0.1782       0.5619       0.5742
   1   snp37         37    A  INTERCEPT      200    -0.1092           NA           NA
   1   snp38         38    B        DOM      200    -0.3711       -1.169       0.2424
   1   snp38         38    B  INTERCEPT      200     0.2877           NA           NA
   1   snp39         39    B        DOM      200    -0.2179      -0.6934        0.488
   1   snp39         39    B  INTERCEPT      200     0.1759           NA           NA
   1   snp40         40    B        DOM      200     0.2907       0.8926       0.3721
   1   snp40         40    B  INTERCEPT      200    -0.1967           NA           NA
   1   snp41         41    B        DOM      200    -0.1358      -0.4125       0.6799
   1   snp41         41    B  INTERCEPT      200     0.1226           NA           NA
   1   snp42         42    B        DOM      200     -0.237      -0.7277       0.4668
   1   snp42         42    B  INTERCEPT      200     0.1967           NA           NA
   1   snp43         43    A        DOM      200     0.2307       0.7225         0.47
   1   snp43         43    A  INTERCEPT      200    -0.1484           NA           NA
   1   snp44         44    A        DOM      200     0.4929        1.521       0.1284
   1   snp44         44    A  INTERCEPT      200    -0.3429           NA           NA
   1   snp45         45    A        DOM      200    -0.6426       -1.892      0.05845
   1   snp45         45    A  INTERCEPT      200     0.5108           NA           NA
   1   snp46         46    A        DOM      200     0.1889       0.5734       0.5663
   1   snp46         46    A  INTERCEPT      200    -0.1226           NA           NA
   1   snp47         47    B        DOM      200    0.02857      0.09259       0.9262
   1   snp47         47    B  INTERCEPT      200  -4.27e-07           NA           NA
   1   snp48         48    B        DOM      200    -0.4383       -1.353       0.1762
   1   snp48         48    B  INTERCEPT      200     0.3429           NA           NA
   1   snp49         49    A        DOM      200   -0.06899      -0.2213       0.8249
   1   snp49         49    A  INTERCEPT      200    0.06899           NA           NA