Mercurial > repos > iuc > plink
view test-data/out.hardy @ 10:2c0ac05fe240 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/plink commit 6d29c051fe8a6564805da7a13668d067c31f0e86
| author | iuc |
|---|---|
| date | Tue, 14 Nov 2023 17:51:25 +0000 |
| parents | a98caf1d69ab |
| children |
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CHR SNP TEST A1 A2 GENO O(HET) E(HET) P 1 snp0 ALL A B 42/104/54 0.52 0.4982 0.5729 1 snp0 AFF A B 21/55/25 0.5446 0.4992 0.4284 1 snp0 UNAFF A B 21/49/29 0.4949 0.4967 1 1 snp1 ALL A B 49/97/54 0.485 0.4997 0.6729 1 snp1 AFF A B 19/51/31 0.505 0.4929 1 1 snp1 UNAFF A B 30/46/23 0.4646 0.4975 0.5457 1 snp2 ALL A B 47/101/52 0.505 0.4997 1 1 snp2 AFF A B 21/51/29 0.505 0.4969 1 1 snp2 UNAFF A B 26/50/23 0.5051 0.4995 1 1 snp3 ALL B A 48/100/52 0.5 0.4998 1 1 snp3 AFF B A 22/56/23 0.5545 0.5 0.3238 1 snp3 UNAFF B A 26/44/29 0.4444 0.4995 0.3141 1 snp4 ALL B A 53/93/54 0.465 0.5 0.3243 1 snp4 AFF B A 28/43/30 0.4257 0.4998 0.1627 1 snp4 UNAFF B A 25/50/24 0.5051 0.4999 1 1 snp5 ALL B A 42/108/50 0.54 0.4992 0.3209 1 snp5 AFF B A 26/53/22 0.5248 0.4992 0.6923 1 snp5 UNAFF B A 16/55/28 0.5556 0.4927 0.3064 1 snp6 ALL A B 48/104/48 0.52 0.5 0.6713 1 snp6 AFF A B 26/49/26 0.4851 0.5 0.8422 1 snp6 UNAFF A B 22/55/22 0.5556 0.5 0.3192 1 snp7 ALL A B 42/114/44 0.57 0.5 0.06552 1 snp7 AFF A B 23/56/22 0.5545 0.5 0.3238 1 snp7 UNAFF A B 19/58/22 0.5859 0.4995 0.1097 1 snp8 ALL B A 49/95/56 0.475 0.4994 0.4818 1 snp8 AFF B A 26/50/25 0.495 0.5 1 1 snp8 UNAFF B A 23/45/31 0.4545 0.4967 0.4204 1 snp9 ALL A B 39/106/55 0.53 0.4968 0.3944 1 snp9 AFF A B 24/49/28 0.4851 0.4992 0.8421 1 snp9 UNAFF A B 15/57/27 0.5758 0.4927 0.1518 1 snp10 ALL B A 41/109/50 0.545 0.499 0.2563 1 snp10 AFF B A 21/54/26 0.5347 0.4988 0.5519 1 snp10 UNAFF B A 20/55/24 0.5556 0.4992 0.3173 1 snp11 ALL B A 44/101/55 0.505 0.4985 0.8881 1 snp11 AFF B A 20/53/28 0.5248 0.4969 0.6894 1 snp11 UNAFF B A 24/48/27 0.4848 0.4995 0.8406 1 snp12 ALL B A 40/109/51 0.545 0.4985 0.2051 1 snp12 AFF B A 22/57/22 0.5644 0.5 0.2364 1 snp12 UNAFF B A 18/52/29 0.5253 0.4938 0.6836 1 snp13 ALL A B 50/99/51 0.495 0.5 0.8881 1 snp13 AFF A B 20/49/32 0.4851 0.4929 0.8426 1 snp13 UNAFF A B 30/50/19 0.5051 0.4938 1 1 snp14 ALL B A 49/98/53 0.49 0.4998 0.7784 1 snp14 AFF B A 24/48/29 0.4752 0.4988 0.6902 1 snp14 UNAFF B A 25/50/24 0.5051 0.4999 1 1 snp15 ALL A B 41/107/52 0.535 0.4985 0.3245 1 snp15 AFF A B 24/55/22 0.5446 0.4998 0.4297 1 snp15 UNAFF A B 17/52/30 0.5253 0.4914 0.5456 1 snp16 ALL A B 44/100/56 0.5 0.4982 1 1 snp16 AFF A B 21/51/29 0.505 0.4969 1 1 snp16 UNAFF A B 23/49/27 0.4949 0.4992 1 1 snp39 ALL B A 36/113/51 0.565 0.4972 0.06513 1 snp39 AFF B A 18/52/31 0.5149 0.4917 0.6903 1 snp39 UNAFF B A 18/61/20 0.6162 0.4998 0.02774 1 snp40 ALL B A 53/91/56 0.455 0.4999 0.205 1 snp40 AFF B A 30/46/25 0.4554 0.4988 0.4251 1 snp40 UNAFF B A 23/45/31 0.4545 0.4967 0.4204 1 snp41 ALL B A 44/105/51 0.525 0.4994 0.5708 1 snp41 AFF B A 19/55/27 0.5446 0.4969 0.4239 1 snp41 UNAFF B A 25/50/24 0.5051 0.4999 1 1 snp42 ALL B A 51/97/52 0.485 0.5 0.6728 1 snp42 AFF B A 27/43/31 0.4257 0.4992 0.1625 1 snp42 UNAFF B A 24/54/21 0.5455 0.4995 0.4246 1 snp44 ALL A B 44/108/48 0.54 0.4998 0.3216 1 snp44 AFF A B 19/54/28 0.5347 0.496 0.5475 1 snp44 UNAFF A B 25/54/20 0.5455 0.4987 0.4229 1 snp46 ALL A B 45/105/50 0.525 0.4997 0.5711 1 snp46 AFF A B 17/54/30 0.5347 0.4917 0.4253 1 snp46 UNAFF A B 28/51/20 0.5152 0.4967 0.84 1 snp48 ALL B A 50/96/54 0.48 0.4998 0.5735 1 snp48 AFF B A 32/41/28 0.4059 0.4992 0.07221 1 snp48 UNAFF B A 18/55/26 0.5556 0.4967 0.3123 23 snp17 ALL B A 43/105/52 0.525 0.499 0.5705 23 snp17 AFF B A 23/51/27 0.505 0.4992 1 23 snp17 UNAFF B A 20/54/25 0.5455 0.4987 0.4229 23 snp18 ALL B A 46/101/53 0.505 0.4994 1 23 snp18 AFF B A 23/53/25 0.5248 0.4998 0.6931 23 snp18 UNAFF B A 23/48/28 0.4848 0.4987 0.8405 23 snp19 ALL A B 48/101/51 0.505 0.4999 1 23 snp19 AFF A B 24/49/28 0.4851 0.4992 0.8421 23 snp19 UNAFF A B 24/52/23 0.5253 0.4999 0.6904 23 snp20 ALL A B 52/92/56 0.46 0.4998 0.26 23 snp20 AFF A B 26/48/27 0.4752 0.5 0.6905 23 snp20 UNAFF A B 26/44/29 0.4444 0.4995 0.3141 23 snp21 ALL A B 39/97/64 0.485 0.4922 0.8858 23 snp21 AFF A B 22/49/30 0.4851 0.4969 0.842 23 snp21 UNAFF A B 17/48/34 0.4848 0.4853 1 23 snp22 ALL A B 48/92/60 0.46 0.4982 0.3199 23 snp22 AFF A B 21/49/31 0.4851 0.4951 0.8422 23 snp22 UNAFF A B 27/43/29 0.4343 0.4998 0.2269 23 snp23 ALL B A 50/97/53 0.485 0.4999 0.6729 23 snp23 AFF B A 30/43/28 0.4257 0.4998 0.1627 23 snp23 UNAFF B A 20/54/25 0.5455 0.4987 0.4229 23 snp24 ALL A B 50/99/51 0.495 0.5 0.8881 23 snp24 AFF A B 25/46/30 0.4554 0.4988 0.4251 23 snp24 UNAFF A B 25/53/21 0.5354 0.4992 0.5487 23 snp25 ALL A B 45/99/56 0.495 0.4985 1 23 snp25 AFF A B 21/55/25 0.5446 0.4992 0.4284 23 snp25 UNAFF A B 24/44/31 0.4444 0.4975 0.3136 23 snp26 ALL B A 48/93/59 0.465 0.4985 0.3942 23 snp26 AFF B A 21/46/34 0.4554 0.4917 0.543 23 snp26 UNAFF B A 27/47/25 0.4747 0.4998 0.6875 23 snp27 ALL A B 46/100/54 0.5 0.4992 1 23 snp27 AFF A B 25/50/26 0.495 0.5 1 23 snp27 UNAFF A B 21/50/28 0.5051 0.4975 1 23 snp28 ALL B A 46/106/48 0.53 0.5 0.4793 23 snp28 AFF B A 26/53/22 0.5248 0.4992 0.6923 23 snp28 UNAFF B A 20/53/26 0.5354 0.4982 0.5469 23 snp29 ALL B A 53/89/58 0.445 0.4997 0.1213 23 snp29 AFF B A 24/43/34 0.4257 0.4951 0.1627 23 snp29 UNAFF B A 29/46/24 0.4646 0.4987 0.5458 23 snp30 ALL A B 49/96/55 0.48 0.4996 0.5736 23 snp30 AFF A B 26/49/26 0.4851 0.5 0.8422 23 snp30 UNAFF A B 23/47/29 0.4747 0.4982 0.6872 23 snp31 ALL B A 44/100/56 0.5 0.4982 1 23 snp31 AFF B A 21/48/32 0.4752 0.4941 0.6908 23 snp31 UNAFF B A 23/52/24 0.5253 0.4999 0.6904 23 snp32 ALL B A 49/94/57 0.47 0.4992 0.3988 23 snp32 AFF B A 25/45/31 0.4455 0.4982 0.3186 23 snp32 UNAFF B A 24/49/26 0.4949 0.4998 1 23 snp33 ALL A B 47/102/51 0.51 0.4998 0.8874 23 snp33 AFF A B 24/54/23 0.5347 0.5 0.5541 23 snp33 UNAFF A B 23/48/28 0.4848 0.4987 0.8405 23 snp34 ALL B A 43/108/49 0.54 0.4996 0.3213 23 snp34 AFF B A 17/58/26 0.5743 0.496 0.1599 23 snp34 UNAFF B A 26/50/23 0.5051 0.4995 1 23 snp35 ALL B A 47/102/51 0.51 0.4998 0.8874 23 snp35 AFF B A 22/51/28 0.505 0.4982 1 23 snp35 UNAFF B A 25/51/23 0.5152 0.4998 0.8421 23 snp36 ALL A B 45/101/54 0.505 0.499 1 23 snp36 AFF A B 25/51/25 0.505 0.5 1 23 snp36 UNAFF A B 20/50/29 0.5051 0.4959 1 23 snp37 ALL A B 47/100/53 0.5 0.4996 1 23 snp37 AFF A B 23/56/22 0.5545 0.5 0.3238 23 snp37 UNAFF A B 24/44/31 0.4444 0.4975 0.3136 23 snp38 ALL B A 46/106/48 0.53 0.5 0.4793 23 snp38 AFF B A 18/53/30 0.5248 0.4929 0.6859 23 snp38 UNAFF B A 28/53/18 0.5354 0.4949 0.5421 23 snp43 ALL A B 48/103/49 0.515 0.5 0.7772 23 snp43 AFF A B 24/54/23 0.5347 0.5 0.5541 23 snp43 UNAFF A B 24/49/26 0.4949 0.4998 1 23 snp45 ALL A B 42/98/60 0.49 0.496 0.8869 23 snp45 AFF A B 22/49/30 0.4851 0.4969 0.842 23 snp45 UNAFF A B 20/49/30 0.4949 0.4949 1 23 snp47 ALL B A 45/102/53 0.51 0.4992 0.8873 23 snp47 AFF B A 24/46/31 0.4554 0.4976 0.425 23 snp47 UNAFF B A 21/56/22 0.5657 0.4999 0.2316 23 snp49 ALL A B 54/88/58 0.44 0.4998 0.09091 23 snp49 AFF A B 24/47/30 0.4653 0.4982 0.5497 23 snp49 UNAFF A B 30/41/28 0.4141 0.4998 0.1068