Mercurial > repos > iuc > polypolish

diff macro.xml @ 2:f355085dd2aa draft default tip

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planemo upload for repository https://github.com/mesocentre-clermont-auvergne/galaxy-tools/tree/master/tools/polypolish commit 2a8a85c8b08a62edbd11c34126753192baf6da66
author iuc
date Thu, 11 Jan 2024 16:44:56 +0000
parents bd2a15dbcea1
children
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--- a/macro.xml	Fri Oct 20 12:41:27 2023 +0000
+++ b/macro.xml	Thu Jan 11 16:44:56 2024 +0000
@@ -1,9 +1,14 @@
 
 <macros>
   <token name="@TOOL_VERSION@">0.5.0</token>
-  <token name="@VERSION_SUFFIX@">1</token>
+  <token name="@VERSION_SUFFIX@">2</token>
   <token name="@PROFILE@">21.05</token>
-  <token name="@THREADS@">\${GALAXY_SLOTS:-7}</token>
+
+  <token name="@THREADS@"><![CDATA[
+      ##compute the number of ADDITIONAL threads to be used by samtools (-@)
+      addthreads=\${GALAXY_SLOTS:-1} && (( addthreads-- )) &&
+  ]]></token>
+
   <xml name="version_command">
      <version_command><![CDATA[polypolish -V]]></version_command>
   </xml>
@@ -15,7 +20,7 @@
   <xml name="requirements">
     <requirements>
       <requirement type="package" version="@TOOL_VERSION@">polypolish</requirement>
-      <requirement type="package" version="1.13">samtools</requirement>
+      <requirement type="package" version="1.19">samtools</requirement>
     </requirements>
   </xml>
   <xml name="citations">