# HG changeset patch
# User iuc
# Date 1617392317 0
# Node ID 5f76b20953e548923363c228bc128f1672881812
# Parent  93d623d9979c9834d1e674d78f9ce4f89a507897
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/porechop commit e68e5869f08e66fbe2787f23b58c1d66e61d9df2"

diff -r 93d623d9979c -r 5f76b20953e5 porechop.xml
--- a/porechop.xml	Wed Sep 19 08:35:02 2018 -0400
+++ b/porechop.xml	Fri Apr 02 19:38:37 2021 +0000
@@ -1,7 +1,10 @@
-<tool id="porechop" name="Porechop" version="0.2.3">
+<tool id="porechop" name="Porechop" version="@WRAPPER_VERSION@" profile="20.01">
     <description>adapter trimmer for Oxford Nanopore reads</description>
+    <macros>
+        <token name="@WRAPPER_VERSION@">0.2.4</token>
+    </macros>
     <requirements>
-        <requirement type="package" version="0.2.3_seqan2.1.1">porechop</requirement>
+        <requirement type="package" version="@WRAPPER_VERSION@">porechop</requirement>
     </requirements>
     <version_command>porechop --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
@@ -29,7 +32,7 @@
 
     ]]></command>
     <inputs>
-        <param name="input_file" type="data" format="fasta,fastqsanger" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" />
+        <param name="input_file" type="data" format="fasta,fasta.gz,fastqsanger,fastqsanger.gz" label="Input FASTA/FASTQ" help="FASTA/FASTQ of input reads" />
         <param name="format" type="select" label="Output format for the reads" help="Output format for the reads">
             <option selected="True" value="fasta">fasta</option>
             <option value="fastq">fastq</option>
@@ -97,7 +100,7 @@
             <output name="outfile" ftype="fasta" file="out.fasta"/>
         </test>
         <test>
-            <param name="input_file" ftype="fasta" value="test_format.fasta"/>
+            <param name="input_file" ftype="fastqsanger.gz" value="test_format.fastq.gz"/>
             <param name="format" value="fastq"/>
             <output name="outfile" ftype="fastqsanger" file="out.fastq"/>
         </test>
diff -r 93d623d9979c -r 5f76b20953e5 test-data/test_format.fastq.gz
Binary file test-data/test_format.fastq.gz has changed