Mercurial > repos > iuc > poretools_events
comparison poretools_events.xml @ 0:1d835c691480 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:45:24 -0500 |
parents | |
children | 28d7819c312f |
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-1:000000000000 | 0:1d835c691480 |
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1 <?xml version="1.0"?> | |
2 <tool id="poretools_events" name="Extract nanopore events" version="@VERSION@.0"> | |
3 <description>from a set of sequencing reads</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements" /> | |
8 <command detect_errors="aggressive"> | |
9 <![CDATA[ | |
10 poretools events $precalled '$input' > '$output' | |
11 ]]> | |
12 </command> | |
13 <inputs> | |
14 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> | |
15 <param name="precalled" argument="--pre-basecalled" type="boolean" truevalue="--pre-basecalled" falsevalue="--pre-basecalled" label="Report pre-basecalled events" /> | |
16 </inputs> | |
17 <outputs> | |
18 <data name="output" format="tabular" /> | |
19 </outputs> | |
20 <tests> | |
21 <test> | |
22 <expand macro="test_input" /> | |
23 <param name="precalled" value="false" /> | |
24 <output name="output" file="poretools-events-out1.tabular" ftype="tabular" /> | |
25 </test> | |
26 <test> | |
27 <expand macro="test_input" /> | |
28 <param name="precalled" value="true" /> | |
29 <output name="output" file="poretools-events-out2.tabular" ftype="tabular" /> | |
30 </test> | |
31 </tests> | |
32 <help> | |
33 Extract the raw nanopore events from each FAST5 file. | |
34 </help> | |
35 <expand macro="citations" /> | |
36 </tool> |