Mercurial > repos > iuc > poretools_nucdist

annotate macros.xml @ 1:a57b6350fd5d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
author iuc
date Sun, 19 Jan 2020 09:08:37 -0500
parents 3ae7ccba16cf
children 5c4fa65f5733
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
2 <macros>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
3 <xml name="requirements">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
4 <requirements>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
5 <requirement type="package" version="@VERSION@">poretools</requirement>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
6 <yield />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
7 </requirements>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
8 </xml>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
9 <token name="@VERSION@">0.6.1a1</token>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
10 <xml name="citations">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
11 <citations>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
12 <citation type="doi">10.1093/bioinformatics/btu555</citation>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
13 </citations>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
14 </xml>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
15 <xml name="plot_options">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
16 <param name="extension" type="select" label="File format for histogram">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
17 <option value="png">PNG</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
18 <option value="pdf">PDF</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
19 <option value="svg">SVG</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
20 <yield />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
21 </param>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
22 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
23 </xml>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
24 <xml name="image_output">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
25 <data name="output" format="png">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
26 <change_format>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
27 <when input="extension" value="pdf" format="pdf" />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
28 <when input="extension" value="svg" format="svg" />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
29 <yield />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
30 </change_format>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
31 </data>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
32 </xml>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
33 <xml name="stat_options">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
34 <param name="type" argument="--type" type="select" label="Filter by type of read">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
35 <option value="all" selected="true">All</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
36 <option value="fwd">Forward reads</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
37 <option value="rev">Reverse reads</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
38 <option value="fwd,rev">Forward and reverse</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
39 <option value="2D">2D</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
40 <option value="best">Best</option>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
41 </param>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
42 </xml>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
43 <xml name="test_input">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
44 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
45 </xml>
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
46 <xml name="length_options">
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
47 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
48 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
49 </xml>
1
a57b6350fd5d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
iuc
parents: 0
diff changeset
50 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token>
a57b6350fd5d "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
iuc
parents: 0
diff changeset
51 <token name="@profile@">18.09</token>
0
3ae7ccba16cf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
iuc
parents:
diff changeset
52 </macros>