Mercurial > repos > iuc > poretools_occupancy

comparison macros.xml @ 0:336791b5665f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author iuc
date Tue, 19 Dec 2017 14:47:30 -0500
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children 338d15b8d6fb
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-1:000000000000 0:336791b5665f
1 <?xml version="1.0"?>
2 <macros>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="@VERSION@">poretools</requirement>
6 <yield />
7 </requirements>
8 </xml>
9 <token name="@VERSION@">0.6.1a1</token>
10 <xml name="citations">
11 <citations>
12 <citation type="doi">10.1093/bioinformatics/btu555</citation>
13 </citations>
14 </xml>
15 <xml name="plot_options">
16 <param name="extension" type="select" label="File format for histogram">
17 <option value="png">PNG</option>
18 <option value="pdf">PDF</option>
19 <option value="svg">SVG</option>
20 <yield />
21 </param>
22 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
23 </xml>
24 <xml name="image_output">
25 <data name="output" format="png">
26 <change_format>
27 <when input="extension" value="pdf" format="pdf" />
28 <when input="extension" value="svg" format="svg" />
29 <yield />
30 </change_format>
31 </data>
32 </xml>
33 <xml name="stat_options">
34 <param name="type" argument="--type" type="select" label="Filter by type of read">
35 <option value="all" selected="true">All</option>
36 <option value="fwd">Forward reads</option>
37 <option value="rev">Reverse reads</option>
38 <option value="fwd,rev">Forward and reverse</option>
39 <option value="2D">2D</option>
40 <option value="best">Best</option>
41 </param>
42 </xml>
43 <xml name="test_input">
44 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
45 </xml>
46 <xml name="length_options">
47 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
48 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
49 </xml>
50 </macros>