Mercurial > repos > iuc > poretools_occupancy

comparison macros.xml @ 2:0433aad600e9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:56:10 +0000
parents 338d15b8d6fb
children
comparison
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1:338d15b8d6fb 2:0433aad600e9
4 <requirements> 4 <requirements>
5 <requirement type="package" version="@VERSION@">poretools</requirement> 5 <requirement type="package" version="@VERSION@">poretools</requirement>
6 <yield /> 6 <yield />
7 </requirements> 7 </requirements>
8 </xml> 8 </xml>
9 <xml name="bio_tools">
10 <xrefs>
11 <xref type="bio.tools">poretools</xref>
12 </xrefs>
13 </xml>
9 <token name="@VERSION@">0.6.1a1</token> 14 <token name="@VERSION@">0.6.1a1</token>
15 <token name="@PROFILE@">23.1</token>
10 <xml name="citations"> 16 <xml name="citations">
11 <citations> 17 <citations>
12 <citation type="doi">10.1093/bioinformatics/btu555</citation> 18 <citation type="doi">10.1093/bioinformatics/btu555</citation>
13 </citations> 19 </citations>
14 </xml> 20 </xml>
17 <option value="png">PNG</option> 23 <option value="png">PNG</option>
18 <option value="pdf">PDF</option> 24 <option value="pdf">PDF</option>
19 <option value="svg">SVG</option> 25 <option value="svg">SVG</option>
20 <yield /> 26 <yield />
21 </param> 27 </param>
22 <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> 28 <param argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
23 </xml> 29 </xml>
24 <xml name="image_output"> 30 <xml name="image_output">
25 <data name="output" format="png"> 31 <data name="output" format="png">
26 <change_format> 32 <change_format>
27 <when input="extension" value="pdf" format="pdf" /> 33 <when input="extension" value="pdf" format="pdf" />
29 <yield /> 35 <yield />
30 </change_format> 36 </change_format>
31 </data> 37 </data>
32 </xml> 38 </xml>
33 <xml name="stat_options"> 39 <xml name="stat_options">
34 <param name="type" argument="--type" type="select" label="Filter by type of read"> 40 <param argument="--type" type="select" label="Filter by type of read">
35 <option value="all" selected="true">All</option> 41 <option value="all" selected="true">All</option>
36 <option value="fwd">Forward reads</option> 42 <option value="fwd">Forward reads</option>
37 <option value="rev">Reverse reads</option> 43 <option value="rev">Reverse reads</option>
38 <option value="fwd,rev">Forward and reverse</option> 44 <option value="fwd,rev">Forward and reverse</option>
39 <option value="2D">2D</option> 45 <option value="2D">2D</option>
42 </xml> 48 </xml>
43 <xml name="test_input"> 49 <xml name="test_input">
44 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> 50 <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
45 </xml> 51 </xml>
46 <xml name="length_options"> 52 <xml name="length_options">
47 <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" /> 53 <param argument="--min-length" type="integer" value="0" label="Minimum read length" />
48 <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> 54 <param argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
49 </xml> 55 </xml>
50 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token> 56 <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token>
51 <token name="@profile@">18.09</token>
52 </macros> 57 </macros>