# HG changeset patch
# User iuc
# Date 1727423770 0
# Node ID 0433aad600e982aacd6cf7e563071d8276ee1b1d
# Parent  338d15b8d6fbf8ba37a221b166969639d02ebfea
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5

diff -r 338d15b8d6fb -r 0433aad600e9 macros.xml
--- a/macros.xml	Sun Jan 19 09:09:55 2020 -0500
+++ b/macros.xml	Fri Sep 27 07:56:10 2024 +0000
@@ -6,7 +6,13 @@
             <yield />
         </requirements>
     </xml>
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">poretools</xref>
+        </xrefs>
+    </xml>
     <token name="@VERSION@">0.6.1a1</token>
+    <token name="@PROFILE@">23.1</token>
     <xml name="citations">
         <citations>
             <citation type="doi">10.1093/bioinformatics/btu555</citation>
@@ -19,7 +25,7 @@
             <option value="svg">SVG</option>
             <yield />
         </param>
-        <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
+        <param argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" />
     </xml>
     <xml name="image_output">
         <data name="output" format="png">
@@ -31,7 +37,7 @@
         </data>
     </xml>
     <xml name="stat_options">
-        <param name="type" argument="--type" type="select" label="Filter by type of read">
+        <param argument="--type" type="select" label="Filter by type of read">
             <option value="all" selected="true">All</option>
             <option value="fwd">Forward reads</option>
             <option value="rev">Reverse reads</option>
@@ -44,9 +50,8 @@
         <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" />
     </xml>
     <xml name="length_options">
-        <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" />
-        <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
+        <param argument="--min-length" type="integer" value="0" label="Minimum read length" />
+        <param argument="--max-length" type="integer" value="1000000000" label="Maximum read length" />
     </xml>
     <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token>
-    <token name="@profile@">18.09</token>
 </macros>
diff -r 338d15b8d6fb -r 0433aad600e9 poretools_occupancy.xml
--- a/poretools_occupancy.xml	Sun Jan 19 09:09:55 2020 -0500
+++ b/poretools_occupancy.xml	Fri Sep 27 07:56:10 2024 +0000
@@ -1,9 +1,9 @@
-<?xml version="1.0"?>
-<tool id="poretools_occupancy" name="Plot performance" version="@VERSION@.1">
+<tool id="poretools_occupancy" name="Plot performance" version="@VERSION@.1" profile="@PROFILE@">
     <description>per cell in nanopore reads</description>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
@@ -23,7 +23,7 @@
             <option value="pdf">PDF</option>
             <option value="svg">SVG</option>
         </param>
-        <param name="plot_type" argument="--plot-type" type="select" label="Plot type to generate">
+        <param argument="--plot-type" type="select" label="Plot type to generate">
             <option value="read_count">Read count</option>
             <option value="total_bp">Total base pairs</option>
         </param>
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-tabular-out1.tabular
--- a/test-data/poretools-tabular-out1.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ b/test-data/poretools-tabular-out1.tabular	Fri Sep 27 07:56:10 2024 +0000
@@ -1,13 +1,5 @@
 length	name	sequence	quals
-202	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT	)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((
-159	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC	""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$
 212	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA	"#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'#
-413	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT	))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)
-376	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC	"$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$
 373	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA	##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$#
-523	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT	(((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+*
-464	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA	#"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%#
 494	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA	#$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&#
-692	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT	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
-602	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC	####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$
 657	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT	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
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-tabular-out2.tabular
--- a/test-data/poretools-tabular-out2.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ b/test-data/poretools-tabular-out2.tabular	Fri Sep 27 07:56:10 2024 +0000
@@ -1,13 +1,5 @@
 length	name	sequence	quals
-202	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT	)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((
 159	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC	""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$
-212	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA	"#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'#
-413	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT	))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)
 376	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC	"$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$
-373	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA	##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$#
-523	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT	(((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+*
 464	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA	#"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%#
-494	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA	#$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&#
-692	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT	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
 602	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC	####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$
-657	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT	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
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-tabular-out3.tabular
--- a/test-data/poretools-tabular-out3.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ b/test-data/poretools-tabular-out3.tabular	Fri Sep 27 07:56:10 2024 +0000
@@ -1,13 +1,5 @@
 length	name	sequence	quals
 202	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT	)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((
-159	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC	""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$
-212	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA	"#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'#
 413	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT	))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)
-376	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC	"$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$
-373	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA	##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$#
 523	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT	(((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+*
-464	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA	#"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%#
-494	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA	#$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&#
 692	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT	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
-602	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC	####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$
-657	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT	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
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-tabular-out4.tabular
--- a/test-data/poretools-tabular-out4.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ b/test-data/poretools-tabular-out4.tabular	Fri Sep 27 07:56:10 2024 +0000
@@ -1,13 +1,5 @@
 length	name	sequence	quals
 202	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT	)))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()(((
-159	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC	""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$
-212	@b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA	"#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'#
 413	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT	))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**)
-376	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC	"$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$
-373	@935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA	##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$#
 523	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT	(((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+*
-464	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA	#"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%#
-494	@e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA	#$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&#
 692	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT	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
-602	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC	####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$
-657	@2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT	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
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-times-out2.tabular
--- a/test-data/poretools-times-out2.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-channel	filename	read_length	exp_starttime	unix_timestamp	duration	unix_timestamp_end	iso_timestamp	day	hour	minute
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	202	1457127309	1457127626	1	1457127627	2016-03-04T21:40:26+0000	04	21	40
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	413	1457127309	1457129549	4	1457129553	2016-03-04T22:12:29+0000	04	22	12
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	523	1457127309	1457148908	5	1457148913	2016-03-05T03:35:08+0000	05	03	35
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	692	1457127309	1457129771	6	1457129777	2016-03-04T22:16:11+0000	04	22	16
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-times-out3.tabular
--- a/test-data/poretools-times-out3.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-channel	filename	read_length	exp_starttime	unix_timestamp	duration	unix_timestamp_end	iso_timestamp	day	hour	minute
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	202	1457127309	1457127626	1	1457127627	2016-03-04T21:40:26+0000	04	21	40
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	413	1457127309	1457129549	4	1457129553	2016-03-04T22:12:29+0000	04	22	12
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	523	1457127309	1457148908	5	1457148913	2016-03-05T03:35:08+0000	05	03	35
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	692	1457127309	1457129771	6	1457129777	2016-03-04T22:16:11+0000	04	22	16
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-times-out4.tabular
--- a/test-data/poretools-times-out4.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-channel	filename	read_length	exp_starttime	unix_timestamp	duration	unix_timestamp_end	iso_timestamp	day	hour	minute
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	202	1457127309	1457127626	1	1457127627	2016-03-04T21:40:26+0000	04	21	40
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	413	1457127309	1457129549	4	1457129553	2016-03-04T22:12:29+0000	04	22	12
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	523	1457127309	1457148908	5	1457148913	2016-03-05T03:35:08+0000	05	03	35
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	692	1457127309	1457129771	6	1457129777	2016-03-04T22:16:11+0000	04	22	16
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-times-out5.tabular
--- a/test-data/poretools-times-out5.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-channel	filename	read_length	exp_starttime	unix_timestamp	duration	unix_timestamp_end	iso_timestamp	day	hour	minute
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5	202	1457127309	1457127626	1	1457127627	2016-03-04T21:40:26+0000	04	21	40
-128	.poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5	413	1457127309	1457129549	4	1457129553	2016-03-04T22:12:29+0000	04	22	12
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5	523	1457127309	1457148908	5	1457148913	2016-03-05T03:35:08+0000	05	03	35
-126	.poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5	692	1457127309	1457129771	6	1457129777	2016-03-04T22:16:11+0000	04	22	16
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-winner-out1.tabular
--- a/test-data/poretools-winner-out1.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ b/test-data/poretools-winner-out1.tabular	Fri Sep 27 07:56:10 2024 +0000
@@ -1,2 +1,2 @@
->2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
-CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT
diff -r 338d15b8d6fb -r 0433aad600e9 test-data/poretools-winner-out2.tabular
--- a/test-data/poretools-winner-out2.tabular	Sun Jan 19 09:09:55 2020 -0500
+++ b/test-data/poretools-winner-out2.tabular	Fri Sep 27 07:56:10 2024 +0000
@@ -1,2 +1,2 @@
->2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
-CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT
+>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5
+ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC