Mercurial > repos > iuc > poretools_qualpos

comparison poretools_qualpos.xml @ 1:4fe6b96aff72 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
author iuc
date Sun, 19 Jan 2020 09:07:34 -0500
parents 2e22ebec211a
children 626b6c2be5c2
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0:2e22ebec211a 1:4fe6b96aff72
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.0"> 2 <tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.1">
3 <description>plot of quality score distribution over positions in nanopore reads</description> 3 <description>plot of quality score distribution over positions in nanopore reads</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
9 <![CDATA[ 9 <![CDATA[
10 poretools qualpos '$input' --saveas qualpos.$extension --min-length $min_length 10 @MPLBACKEND@
11 --max-length $max_length --bin-width $bin_width $theme_bw && mv qualpos.$extension '$output' 11 poretools qualpos '$input' --saveas qualpos.$extension --min-length $min_length --max-length $max_length --bin-width $bin_width $theme_bw && mv qualpos.$extension '$output'
12 ]]> 12 ]]>
13 </command> 13 </command>
14 <inputs> 14 <inputs>
15 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> 15 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
16 <expand macro="plot_options"> 16 <expand macro="plot_options">
28 </outputs> 28 </outputs>
29 <tests> 29 <tests>
30 <test> 30 <test>
31 <expand macro="test_input" /> 31 <expand macro="test_input" />
32 <param name="extension" value="png" /> 32 <param name="extension" value="png" />
33 <output name="output" file="poretools-qualpos-out1.png" ftype="png" lines_diff="195" /> 33 <output name="output" file="poretools-qualpos-out1.png" ftype="png" compare="sim_size" />
34 </test> 34 </test>
35 <test> 35 <test>
36 <expand macro="test_input" /> 36 <expand macro="test_input" />
37 <param name="extension" value="pdf" /> 37 <param name="extension" value="pdf" />
38 <output name="output" file="poretools-qualpos-out1.pdf" ftype="pdf" lines_diff="36" /> 38 <output name="output" file="poretools-qualpos-out1.pdf" ftype="pdf" lines_diff="36" />