Mercurial > repos > iuc > poretools_qualpos

diff poretools_qualpos.xml @ 2:626b6c2be5c2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author iuc
date Fri, 27 Sep 2024 07:47:25 +0000
parents 4fe6b96aff72
children
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--- a/poretools_qualpos.xml	Sun Jan 19 09:07:34 2020 -0500
+++ b/poretools_qualpos.xml	Fri Sep 27 07:47:25 2024 +0000
@@ -1,9 +1,9 @@
-<?xml version="1.0"?>
-<tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.1">
+<tool id="poretools_qualpos" name="Generate box-whisker" version="@VERSION@.1" profile="@PROFILE@">
     <description>plot of quality score distribution over positions in nanopore reads</description>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements" />
     <command detect_errors="aggressive">
     <![CDATA[
@@ -13,13 +13,9 @@
     </command>
     <inputs>
         <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
-        <expand macro="plot_options">
-            <option value="pdf">PDF</option>
-            <option value="svg">SVG</option>
-        </expand>
-        <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color " />
+        <expand macro="plot_options"/>
         <expand macro="length_options" />
-        <param name="bin_width" argument="--bin-width" type="integer" value="1000" label="The width of bins" />
+        <param argument="--bin-width" type="integer" value="1000" label="The width of bins" />
     </inputs>
     <outputs>
         <expand macro="image_output">