Mercurial > repos > iuc > poretools_stats
changeset 2:c1cbe2575d32 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
| author | iuc |
|---|---|
| date | Fri, 27 Sep 2024 07:55:27 +0000 |
| parents | 4b17acf9b6ab |
| children | |
| files | macros.xml poretools_stats.xml test-data/poretools-tabular-out1.tabular test-data/poretools-tabular-out2.tabular test-data/poretools-tabular-out3.tabular test-data/poretools-tabular-out4.tabular test-data/poretools-times-out2.tabular test-data/poretools-times-out3.tabular test-data/poretools-times-out4.tabular test-data/poretools-times-out5.tabular test-data/poretools-winner-out1.tabular test-data/poretools-winner-out2.tabular |
| diffstat | 12 files changed, 16 insertions(+), 63 deletions(-) [+] |
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--- a/macros.xml Sun Jan 19 09:10:38 2020 -0500 +++ b/macros.xml Fri Sep 27 07:55:27 2024 +0000 @@ -6,7 +6,13 @@ <yield /> </requirements> </xml> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">poretools</xref> + </xrefs> + </xml> <token name="@VERSION@">0.6.1a1</token> + <token name="@PROFILE@">23.1</token> <xml name="citations"> <citations> <citation type="doi">10.1093/bioinformatics/btu555</citation> @@ -19,7 +25,7 @@ <option value="svg">SVG</option> <yield /> </param> - <param name="theme_bw" argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> + <param argument="--theme-bw" type="boolean" truevalue="--theme-bw" falsevalue="" label="Use a monochrome color scheme" /> </xml> <xml name="image_output"> <data name="output" format="png"> @@ -31,7 +37,7 @@ </data> </xml> <xml name="stat_options"> - <param name="type" argument="--type" type="select" label="Filter by type of read"> + <param argument="--type" type="select" label="Filter by type of read"> <option value="all" selected="true">All</option> <option value="fwd">Forward reads</option> <option value="rev">Reverse reads</option> @@ -44,9 +50,8 @@ <param name="input" ftype="fast5.tar" value="poretools-in1.tar.bz2" /> </xml> <xml name="length_options"> - <param name="min_length" argument="--min-length" type="integer" value="0" label="Minimum read length" /> - <param name="max_length" argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> + <param argument="--min-length" type="integer" value="0" label="Minimum read length" /> + <param argument="--max-length" type="integer" value="1000000000" label="Maximum read length" /> </xml> <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND="agg" &&]]></token> - <token name="@profile@">18.09</token> </macros>
--- a/poretools_stats.xml Sun Jan 19 09:10:38 2020 -0500 +++ b/poretools_stats.xml Fri Sep 27 07:55:27 2024 +0000 @@ -1,9 +1,9 @@ -<?xml version="1.0"?> -<tool id="poretools_stats" name="Read length statistics" version="@VERSION@.0"> +<tool id="poretools_stats" name="Read length statistics" version="@VERSION@.0" profile="@PROFILE@"> <description>from a set of FAST5 files</description> <macros> <import>macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements" /> <command detect_errors="aggressive"> <![CDATA[
--- a/test-data/poretools-tabular-out1.tabular Sun Jan 19 09:10:38 2020 -0500 +++ b/test-data/poretools-tabular-out1.tabular Fri Sep 27 07:55:27 2024 +0000 @@ -1,13 +1,5 @@ length name sequence quals -202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( -159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ 212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# -413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) -376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ 373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# -523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* -464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# 494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# -692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) -602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ 657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$%
--- a/test-data/poretools-tabular-out2.tabular Sun Jan 19 09:10:38 2020 -0500 +++ b/test-data/poretools-tabular-out2.tabular Fri Sep 27 07:55:27 2024 +0000 @@ -1,13 +1,5 @@ length name sequence quals -202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( 159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ -212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# -413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) 376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ -373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# -523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* 464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# -494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# -692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) 602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ -657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$%
--- a/test-data/poretools-tabular-out3.tabular Sun Jan 19 09:10:38 2020 -0500 +++ b/test-data/poretools-tabular-out3.tabular Fri Sep 27 07:55:27 2024 +0000 @@ -1,13 +1,5 @@ length name sequence quals 202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( -159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ -212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# 413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) -376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ -373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# 523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* -464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# -494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# 692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) -602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ -657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$%
--- a/test-data/poretools-tabular-out4.tabular Sun Jan 19 09:10:38 2020 -0500 +++ b/test-data/poretools-tabular-out4.tabular Fri Sep 27 07:55:27 2024 +0000 @@ -1,13 +1,5 @@ length name sequence quals 202 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 GAAATTGCTGGTTGCTCCCCGAGGGGCCTATAAACAATCGGATAAGGGTCTAAGTCAGGGCGAAAAAGATTTGGGGGCTCCTAATCTCCGATAATGAGTGCCGCAACATACGGATAGTACCTTTATGCGTAACCGCTCCATACGACAAATAATTATTTATATACGGTACCTACGGAACCAAAATTGACAAGTTCGTACTTTT )))))+*,,*,*--,-,..---./0..++++-/-//**)*)))*,,.///---**)))*))+/,//-.,00.--)***+*+))),)*)))+).*----.--**..,-,**,**,+++++,+*+*)**+,,,**((+,,+,))()**+,++,+**+--,)(((((()(((((()(())))+,//),+--.+(())(((()((( -159 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 ATCGACCATATTGGCTTTTTGGTTATCCTGGTCTACCTCTTGTTGTCTTGGTGGGTGCCAACAGCTATGCATCTGTTGCATCAATCGTGACGGGAAACGAGAGGACAATTTCCCGGGTTAAACATGCCGATTGTCAGCCGCGGGGGCTGGGGAGGTTCC ""$"#$$&%$(&$"#$,<0-+(-'%(#$%$&(&%$$$%'-,(0'$)%(&$"'"#"'"$#$"&#&$##&%$%'%&'00,&'%#$##$$&"####%$'#%(''$$"$"($/=,)''#$$'%%'$'$)$%&$%()''%%"%&%%%(*#(%"$&&(&##&)&$ -212 @b7b29e94-0894-415c-87c4-a809bc8e8bdb_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read95_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 CTTCTGTTGTGGTGCTCTTGCTCCCCAGGGGCCTATAAACGTGCACATAGGGTCTAAGTCAGCGAAAAAGATTTGAGGCTCCCGTATAGATAATGGATCCCCTCAGCCCTAGCTGACCGTCATCCGTAACGCCTCCATACATAAATAATTATTTAGCTCTAGTACACCCAGGCGGATCGCTTCTGGTTTTATATTTCTTGATTACTGATGCA "#')-,;42;7<8544/22.**)-(*()*(')%%&''-*0..+)%%$"'%'*/'%%&$&$%&##$%%(%)%/4)&#&'#$#$#$*#$"#&$$#'&$#*$%&##(&"*%)%&$&&&**(&(%%(%%),-%&%')*/,,(((%$%'$##","#,2''#$$('('*()(+)''&*)%$'(%#&%4.01-17;2&&$'12'')"%)&#$#"$)&'# 413 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 GCTTCTTCTGCTTATATTGCTTAGAAGGAAATACGAGAGGAGAAAGAGTAGATGATGATAAAGGGTCGACTAATTATTTCCGAAGTTTGTTAAAGTCGAAATCGCTTCGAATTTGAAATTGTTGCTGACGCAAGTTAGCGATGCGCGATCCCAGGAGTATAGGGGTTGAAAACGGTTCCATTTGATAAGGTTTTCCATTAATGACGTCACGTTGTTTGGTATTTCCTTCTATTTTCTCCGAAGCGCCCCTCTCTCTCTCATCTCACGTCAGATTCAATTTTATTACAACAAATGTGAAAAGTGGGTTCGCAGAGGTCGCTTAAGCCATTTTCTTAGATACAGCTTGAAAACGAATCTACAGAACAAATCTCCTGCCATTACACTCAGAGTCATGACGGTCGTGTTTATAGAGT ))****-+.,,,++,,-,...-*++/,0.1,++,,..-0/)+-/,----,+,,,-,--,-+****+**+**+-.-.0500-.0-,,+*,.,,,,+-*+./.++,.////10+/,/03/10/.0..-*--./0001.--.++../////0--,./0//****.//..--).0-,-*,,+*)10,+-+++,,./+,+++*)+-++++**)))*))*)+*+,*,.0,.+,****,--)))*)()+(*))))))))**,,,,*))((*))**))(*++(+*-,-,())))**+-0-*****./,)****-0/..,-,,.--,-+,****-./680/--*)+000/.//-,/03/..0--.*,++*+*)**)*)*++++.//0/,++**+))*+++*)))**++-,-,3520...**) -376 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 ACTCTAACTCAGGCTGGTATCTGAGTGTAATGGCGCAGTTGTCTGTAGGGTCGTTCAAGCTGTATCAAGAAATGAGTAAGCGAAAACCTGCGAGCCGATTTTCGCTTTGTTTAGTAAGGTTAGTGACGTGAGGGTGAGAGAGAGAGAGAGCGTTCGGAGAAAATAGAAGGAGAACCCAAACAACGTGACGTCATTGATGAAAACCTTATCGGGAACCCGTTTCAACCCCTATACTCCTCGGCGCGTAGGCTAACTGCGTAGCAACATTCAATTCAGCAGTTTTCCTGTCAGCGACTTCGGAAGCTTAGTCAACAGTGTTTATCAGCTCCTCTTCCTCTCGTATTTCGTTCAAGCAATATAGCAGAGGCGCCTGTCC "$###$$$#%#$"###$'###$"&'.)*(*+,-)$%$&/&$1(*),&&%%('$1)%##%%))+((%#$+&*%&&%$%%'(*,--+()$+-+),#*'%')4:*'$$*:,')'#%#%$&%$+++$*%$'&&)&&&&')'+*-,+*'&*$)%'&&'')'*)+,--'&&'$)(2&$)%%&(&&$&%#%%)$%&&((*(+$')(&(%##'+,+,)'((%%$%(*02*')&))+'"%$%%&'$#&%$$(#$&$%%##'&&,*))*((&%#(%*,(*(**$'()%#*=?/-&*)*(##&%'&+,(+*,)%'&*+*+('%($#'#*2+('%$$$&&%#$(+(('''(')'+30,$)*'((*('&&%#$$%%&%''$'$%&&1/$ -373 @935c5941-a78e-4959-923e-f71157063e92_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch128_read430_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 CATTCTTTGGTGCTGATCCTGCGAGGAGAGGGGGAGGGGAACAATGGTAGCCACTAAATCTATAACAATTATTTCAGAAGTTGTCCGCTTGAATCATTCATTTGAAATTGTTAGTGACGCAAGTTAATGCGCGATCCCAGGAGCGGGCTCGTCCAGTTTACAATTGTCCATGCGTAGTCAGTTGTTATGTTGATTCCTGTTACCGATAGGGTATATAACGCTCCTAGTCGATTCGATTTGCTTGGCGCCATCCAAGTATTCCAGAGTCCTTAGCATTTTCTTAATGGCACGTGAAAACGAATCCCCTAAGAGCCACTTATCACGTCCGATTACATACTCCAGTCATGACGCTTCTGTTTATGTTTCTTAACCA ##''$%)0%%)$&''',&'(&&$-+*-'('*+(('$$&#'#$%$%##$$#%$$#"$%$'$##$%"%#%)&$,5+($),,*0(&,####&)()(**)+)&$&,$&%1,3-*.''#'#$'('/*)+&&&+$&'%()*((%%)$&$#####"$%3%)')5/($$##&*$0%&()#$%%$$&'%(+%&-)%&%,-##((%$%&)*%&&#%""####"#"$$##""#('#$''$$&)0(&(.//$$&&###%&&+%('&%##%+)&&'%$#&%#%$#"(%/FA/+,(&'##$&%%#(&%*1)*()'())*("#$$(%%(&%*%$$$"$#($%##+$$%$####%$'&((&&$$%$)'1.+*:7,))',7&%)#$#$$# 523 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 ATGTTTCTTCAGTGATACCTGTGACATCCGGAAAGGAGGAGGAGGATCAGAAAGGAGGAGTGTGACATAACGCTGACAGTGCGTGCTTAGGTTCGTTAATAAACAAAGCCATATTACGGAGATGGCGTAATCACCTACGATGAAAGTGGTCACGTACGCGTGCCACCTGGGCATCGTCCTCACCCCTTCATTAAATTACAGGCTTTTGACTCCTTCAACCTTCTCGTTGTAATTGGTTAGTACTTATCCTATCTTATTCGCGATCGGCGTTCGATTGGATTTCGCTTCGAATGTAATCCGTATGCGCAATACAAATATTTGAGCTAATTTCCTCTCTTTACGTAATCGTTTTCGTCACCGTCGTCAATTATCGATACGGGAATCAAGTCGAACGAACCCCTGACCGAGAATCAGAAAAACTTTCAGAAGAAAAAGGAAGAAGAGAAAGCTCTTTCACATTGTAAACCAAACGCGAAAGCTCCCGAAAACAAAGGGCGGCGATTCTAAACATTTGGTTTATGTT (((*-,+,,,++*()(())*-)),....+/-,.),-++--./-,))*()))+*+*)*-*,**)())((*)(*()(*--+**)()()*(())))*,--*,+,.,---+)+))()**((())*+,-/./,--,++****+,+,,-02.///..-.--...,,))))))*++,+*++,+++*)*++-+*+**)+++**+)))(((())+*()((()(()))))))((((),-./--+*)))((((()((((((*+,,+,*+*,++++****,1.+*++,+,-.2-,+,-,+*,*.-.1/----*+,*+**++***./.-+*-+))))*,,-/*-*****-,*))))**,+++-,++++*+*,-../.-,**)*)+******-+,+)*++*+-.//../..,,+,..+.)+-+,))*+*++,+*,----.//-0662.-,--.-0.../.,+))-,2/.-++*****+**++++-+-...+,+*****,,.,+*.+,,,++*)))+/.,-10,+***)**++***+* -464 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 GAACACAACTGTTTCCCAGTACACGCTTTGTTTAAGCTTTCGCGTTGGTTCCATGTGAAGAGCTTCTGTTCTTCCTTTTTTGGTATGAAAGTTTTAGTTCTCTTCAGAGTCGTCCCACTTGATGTCCCGTATCGCTTGTGGACATTGTAGAAATGATCGTAAGGGCAGAGGAATTAATTAAAACTTTGTGGTGCCATCCCATTACGGTCGAGCGAATCCAGTAGCACCAGTACCCAGTAAGAACGAACCCTGAGCCAATTACACAGAAGGTTGAAGGAGTCAAGCTGTAGTTGGAAGGGGTGAAGGTCCGCACAAGATTCGATCCTCGTTATCGTACCTGATTACACATCTCTGCGTGATATGATGATTCTTTATTAGCAACCGAGCACGCACTGTTGGCGTTATGTTCGGATACTACGGTCTATCCTCTCAAACGGTCCAGCTCCCAACATCGGCGTCAGTCA #"#$"$%%#$#*3.$%&%$(#$%#$#'-,(4*$#$$%(2+'&%%*.%%,:'%&,)*,'%(%%$*,'''(*(%,'%)2>B>/'#$$&&$)+%/;,&#$()'&'&&($%#$(&&*&$$$#%%$$'&)+%&$)#%$##%'%&%#$$#&-%##&$&$#$#%$$$%&##&$$$&,-('(###'$')'#$+14(&$$($%$%#$&#'*+)*%)+$$&%$'&&(%&&%)"%$$'&%#)#%'#'$'%'(%&%%&%&%#$###&#&'+&####$($$$#'*)(+,-*$)&&'$&%$$$$((%+'&&$%#''$$$#&$%%$#$$$,%(*&"#&###(&*$%%%$&#$$%$&)+()$(&'$%$$##$)"&$#$##$&#&.#&1)&(%%'%&#'%#&&&%$&%$%(',('('&)+&%%-&#"$#%$%$$'$$,)(),'%%$$$###'##*((%(%%'%#$##"%##$(*-)&'&%# -494 @e643ceef-570f-4ba7-bdae-e9e78da71703_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read1377_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 TTGTGTTTCTTCTTATGACTTGCTATGCGCAGGGGGGAGGAGAGATGTAGCGGAGGGCAGAGTGTGAAAGGGGTAGTTCATTATGCTGTCGTTAAGCCTCCGGGGCTATTGAAAACGATGAATGGGGCCAGGCGCTGGTCACGTACACGTGCGACACTGATGAAACGTTCCTCACCATTCATTAAATTACCGGCTTTTAAACGTGAACATGCTGTTGTAATTCTTCATGGTGGTGTAATGTACTTAGCAGTAGCGTTCAATTGGATTTCGCTTCGAATGTAGTCGATCTGCGCATCCACTGGTCGACGATTTCCTCTCTTTACTGATCGTAGTTCGTCACGTCGTCGTACGATAGGATCAAAGTCGCGGGATGGCTATCCCCGGGCGAACTTTCCAGAGAAGGAAGAAGAAAGACCTTTCGGCTTGTAGTAAGACCCCGAAGACTCGAAAACAGGGCAACGCGAATTCCACTTCGTTATGTTCTTACTATTGGA #$$*)*8+$()&(%%$#$#&'$#"%%#$($+&,&(-(',.,*%$%%$$$"$$('%%'&('%%%%%$##$#$$"$#$%&%$&$#'$$#$)''+&$%"&##($#$$###$*&*$&(%%$&($&$&"###%$$#&"#!%$$($$%$'$&%&'*%&$#$#$%$$$($/$/.2)'$#%#%(#**)%)&'$#)%#%''(%')0'$%#$$'$&#$#&$&$&,2-,/%1,"%*%%$#%&##%%&)((('&%(&&%'*%&'$((-:'%(**)((/5)%$&,,*%)#'%$$#&$"#'$)$&%%%#$$%#$#"'$"#$"$17)&##%&')3'##$$$$$#%#%+)'&)&#+*,)&'%%&#%#%#$*%&%$%%##&&#%%'#'#$$%##$%)$'%%'%#'$#)48$$#%#'#*)-,,))')((%#$#&&-'(##'%*%$&"""$#$#')%$'($$#"'$&&)$&'%(*&%%'$$)+)6*(#%#%'%&*,)(&3*$%'$%%$(,,&# 692 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT ))))+-*)*)+**++**+)*)*,-,,+++-+++/./20.//.+...*.,-,--+***,+++++**+++,.//.,++,.54.320/--.,-.++-.,,.-++++*,+,-./0/.0000/..0-,----/.----,+++++,00.//./.++*+//0.//00/285/+*+**+-,,,,,-,**,,,+--00*0/)*.,+,+.,,,+++,,-+*,*+-+,+,--..,+****)**+++,+++***)*+)**)-,.20//02-))**++*+**+*+**-/0./-,,,--))*))++)+*++..,,+-./.+++++,++++,025-,5.-/,-//0/---,,.43430,,-+,+,.,/..-.+***)))))..//-+,***)))+)++))),***)**))(())--.-())((,((*(*(((*+-0/---,*/**)*,-/.0.-,.,++)*,+,,-,--,-,+++**))**,+*+*))))*))))*))+(+,-+,**)))*)*)))*++((*+****,,,---+*,+*+,0,++*)))(,03.--1+***-*-)*)+****))))+))+***+21--/.-)))**)*)***-10--,-,,+*+)))+,..,,/,,,,-,+)())***)())*++++,+)))***+*))((,+(((())(*)()()***,,---,,,+)((((,()**.*(***+))) -602 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC ####"##&%##$#+%%##%#'%#$%$)-)'($%&&((,()+-'&'(($%#(&%1-$##$'$#%#'08+'$$%#"&$#&.+$%*#('%%##$$&&)))$(''($(('##+)6<4)'(*()',,(.'&%&'*($%&%##-,('#$$"$$'04)&%$#('&%%%%'$##(%%$*$'$#'''&),%$%$%$%$$$*+%$%(%%&&''%%(&%1-(%$"#%&&+**-,'&''((&#'#$&%'&%'#(&+#)*))//+&&%$%$%$%&)&&$),-*&%$$$&)%$#$'&+(#%'&''$##(2(%&$%$..('($&%%*.+'$%%%),')'()%*'&)%#&##"###&%%%'*$'++($$%#'%%"($)&#$%''&(**)$+*&)3-&%$$$#$)&$%'%)*')&&$%%&$#&($#+0&$"##%###'%(%'&(%$%(%#&$%$&$&$#%###$$&$%&+&&$$%&$$'('&(&&&#%$$'%%&'%'"%###$$#-)%#$#%'%%$&'''"&%$$'%$$)#(-*&)+09))'#'#%&%&$$(&%%%)(+()&%$('"""$"#&#'$$'./(*&&('%$#$$##'%$&$&%$"&"))##$#'$##"$)'$ -657 @2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT "##)7.'-(&&$$&#'$$$''%$%$&(),210)&&)&)+&.-+'((,%#))())&%)(')+)*+.***CC/&'$'')(*###$&%)5)1')&./%%)%++)&%$%%.#''(#%*)+&&).*)'*%$+A/'&%+%)''-;+)-'++-1)9>0()((%&%&&(')%$%#+-/&'#%+3&**/&''&'%'%$($%&$'(&'(&)*++)('&'#$$#"#"#%'$&%#$#")$&.'#&$%$$$$($&#)#%$#%,10*)%$&$,)&'"%#"%$&%1&')&%%%'-A:10/,+(*0KLI,,I330,**.,$&$'&,7255.)+(%'&&+$,%%%'$$$&&%$$&''$*)$$%#%$&$'%#$$$#"##$$%$$(#*'#$&%#&$#$$$(%&%'1)'%$/,(')3+0-,,1*)0$##'#$%$&&(#$$##"#$#'&$,(&&#$%$&$$)&+,++**(%+'&&%$$$%"$"#%$,5')(''&',:M/($&,&($%$$((7,&%%--$&$##$%$$%))$+*',.--+-3/'$')%&##&$*($''-3E3)$)'&('&)#&&())+)))('(&/*))',-&0**('&%#$##$)#'&+,,(&&&%)'%%$%&&*+&%$%"#$$$%)(()%&"#&#)&1.+,**++-C$&$$&$4(%)$$##$#$&$%
--- a/test-data/poretools-times-out2.tabular Sun Jan 19 09:10:38 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
--- a/test-data/poretools-times-out3.tabular Sun Jan 19 09:10:38 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
--- a/test-data/poretools-times-out4.tabular Sun Jan 19 09:10:38 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
--- a/test-data/poretools-times-out5.tabular Sun Jan 19 09:10:38 2020 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,5 +0,0 @@ -channel filename read_length exp_starttime unix_timestamp duration unix_timestamp_end iso_timestamp day hour minute -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read95_strand.fast5 202 1457127309 1457127626 1 1457127627 2016-03-04T21:40:26+0000 04 21 40 -128 .poretools_tmp/test-data/2016_3_4_3507_1_ch128_read430_strand.fast5 413 1457127309 1457129549 4 1457129553 2016-03-04T22:12:29+0000 04 22 12 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read1377_strand.fast5 523 1457127309 1457148908 5 1457148913 2016-03-05T03:35:08+0000 05 03 35 -126 .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 692 1457127309 1457129771 6 1457129777 2016-03-04T22:16:11+0000 04 22 16
--- a/test-data/poretools-winner-out1.tabular Sun Jan 19 09:10:38 2020 -0500 +++ b/test-data/poretools-winner-out1.tabular Fri Sep 27 07:55:27 2024 +0000 @@ -1,2 +1,2 @@ ->2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 -CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT +>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_template CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +GTATTTCTTATGATATTAGATGTAGGCTGGAAATAGAATGCGTGCTTTACAGGCCTCCTCTGCGTATGTTTCCATGGAAGCCGTAGGAACCTTTGATCTTCATACTTGCCCTATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTGATATAACAGGATACGGAAAGAGTTCGAAGTCGAATCGTCCAGCAAGTCGAATGACTCTAAAGACATCGGCACGGCCTTTGAGGCTCGTATATGCCTAATTCCAACAATGCAAAGTACGTGGAACAGATTTCTGCTCTTTTTTGTTCCACTCCGCCAGCCCCCCGAGGTCAGGATGAAATATTACTCTGAAAACCGCCAACCCACGGGACAGCTACGTCGAATGTCGTCGAACAGTTCTATTCCTTCCCCTCCGTTAGTACTACTCTAGGCTACTCAATTCAGGCGATAGAAGGAAAAGTCTGTACCAGGCGGGTTCTTCGGCTTTTCAATGCGCGCTGTTCTGGGGAGCTATCGCTGCAAAGAATCTTTTAAAATCGAGTCGAGTTTTCAGAGTGTTCCTCAATGTAACTGTTGGCAAAGGAGCGGGCCTGGCAGACGTGGGGAATAAGACCCCAAAACCACTTCGTGCACATCGTTCTGGTGTTCATCTGTTCTTAGCTCTTGT
--- a/test-data/poretools-winner-out2.tabular Sun Jan 19 09:10:38 2020 -0500 +++ b/test-data/poretools-winner-out2.tabular Fri Sep 27 07:55:27 2024 +0000 @@ -1,2 +1,2 @@ ->2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_2d CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 -CATGTTTCTGCTGATATTGCTAATGGCTGAACTGGAAATAAGGATCCGTTGCTTGCCAACAACTATACTGCGTGGTATTTTCCCAGTGGAAAGATCGGGAACCTTTGATCTTCAATATAGTTACAATTGGTGGTCGTGATTTTAATCCCAGTTCATCCTTATTTTGGGTATAACAGGATGAGGAGGACGATTCGAAGTCACGATCATGCGCCCAAGTCAGAATGACTCCACACTACTCCTCCTCAGGACCATTTATAAATAAACAGTGATCAAGATTCCAACAATTAAGATGGCTTGAAACCAATTTCTGCTCTTGTTTTTGTTCCCACTCCCCCCTCCCCCCGAGGTCAGGATGAAGTATTAACTCTGAAGATAAAGGACCCCACGACGACAACGGCTTCCAGTTACTTCGAAGGCATTTTTCTACTTCTACTTCCCCTCCGTCTCATCCTCCTCCTCAGCTACCAAATTCACAATAGGACCGCAGGAAAAGTCTGTAGCGAATAGAACCTTCTTCACTACGGTTTCGTACCTAAAATGTTCTGGAAAAATGGATAGAAAAGAATCTTTTAAAATCGAAATCCGATTTTCGGAGTGTTAACAATGTAACTGTTGTAGAAAAGGAGCGGTAAATGAGACGTGGGGAATAAGATACAGAGCAACCACTGTCGTTAAGGACCGTTTGAGTGTTT +>2f378243-7a3f-4584-bfb6-6800def37547_Basecall_2D_complement CPHG_CNU4299G4G_louse_library_2016_3_4_3507_1_ch126_read326_strand .poretools_tmp/test-data/2016_3_4_3507_1_ch126_read326_strand.fast5 +ACACTAGCATCTGTCTGGCCCCGATATTTGTAGTATGTACTTTACGTGTACTGTTACTATGGTATTTTCACCCTCAGTTTGCCCTTGTCACTCGAAAGTCGAATTCAGTGTTTTAAAAGATTGTCTGGTTCTATCGGTTCCGAGCAGTTTTAATAGAACTGATCAATGAAGAAGGTTCGTTCGAGCGAACTTCCAGTGATCTTGTGAATTTGAGCTGAGGAGGAGATGAAAGAGGGAAGTAGAAGTAGAAAAATTGCATCGAAATATGGAATAAATTGTATCGTCGGTCTTGCTTTTATCTGTCAGTTATACTTCAGTAGGAGGGAGTGGGATAACGACAGCAATTAGTTCAGCCTTAGTGTTGAGGAATCTGGTTCTTTAACATCTTTGGTGGGAGGAGTGTCCTTGATTTAATATGCAGAAGTATCCTTGCTGCGAATCGTCATCATCCTTTAACAATAGGATGAAAACCGTTAAAATGCCGACAGTTGGACCTGCGAGCCGCCGGCCCGTATTCATGGGAAAGTACCGCATTAACGTGTGTCAGGCGGGACGTATTATTTCCCGTTCAGCCGATTAAGTATACAGGCACAGAGACTTCC