Mercurial > repos > iuc > poretools_winner
diff poretools_winner.xml @ 0:9d8f41103cc6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:50:39 -0500 |
parents | |
children | 6d93709247c7 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/poretools_winner.xml Tue Dec 19 14:50:39 2017 -0500 @@ -0,0 +1,46 @@ +<?xml version="1.0"?> +<tool id="poretools_winner" name="Get longest read" version="@VERSION@.0"> + <description>from a set of FAST5 files.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="aggressive"> + <![CDATA[ + poretools winner --type $type '$input' > '$output' + ]]> + </command> + <inputs> + <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> + <expand macro="stat_options" /> + </inputs> + <outputs> + <data name="output" format="tabular" /> + </outputs> + <tests> + <test> + <expand macro="test_input" /> + <param name="types" value="fwd" /> + <output name="output" file="poretools-winner-out1.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="rev" /> + <output name="output" file="poretools-winner-out2.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="2D" /> + <output name="output" file="poretools-winner-out3.tabular" ftype="tabular" /> + </test> + <test> + <expand macro="test_input" /> + <param name="types" value="best" /> + <output name="output" file="poretools-winner-out4.tabular" ftype="tabular" /> + </test> + </tests> + <help> + Report the longest read among a set of FAST5 files. + </help> + <expand macro="citations" /> +</tool>