view poretools_winner.xml @ 1:79c1ac92f31b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit d50758dbe64462ba3cdcb7f1df0bcc57a310deab"
author iuc
date Sun, 19 Jan 2020 09:09:35 -0500
parents 9d8f41103cc6
children 6d93709247c7
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<?xml version="1.0"?>
<tool id="poretools_winner" name="Get longest read" version="@VERSION@.0">
    <description>from a set of FAST5 files.</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <command detect_errors="aggressive">
    <![CDATA[
        poretools winner --type $type '$input' > '$output'
    ]]>
    </command>
    <inputs>
        <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" />
        <expand macro="stat_options" />
    </inputs>
    <outputs>
        <data name="output" format="tabular" />
    </outputs>
    <tests>
        <test>
            <expand macro="test_input" />
            <param name="types" value="fwd" />
            <output name="output" file="poretools-winner-out1.tabular" ftype="tabular" />
        </test>
        <test>
            <expand macro="test_input" />
            <param name="types" value="rev" />
            <output name="output" file="poretools-winner-out2.tabular" ftype="tabular" />
        </test>
        <test>
            <expand macro="test_input" />
            <param name="types" value="2D" />
            <output name="output" file="poretools-winner-out3.tabular" ftype="tabular" />
        </test>
        <test>
            <expand macro="test_input" />
            <param name="types" value="best" />
            <output name="output" file="poretools-winner-out4.tabular" ftype="tabular" />
        </test>
    </tests>
    <help>
        Report the longest read among a set of FAST5 files.
    </help>
    <expand macro="citations" />
</tool>